| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,448,210 – 2,448,319 |
| Length | 109 |
| Max. P | 0.702486 |
| Location | 2,448,210 – 2,448,319 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 96.94 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -21.67 |
| Energy contribution | -22.33 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.702486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2448210 109 + 20766785 GCCUAGAACUUGUAUGUUUCGUAACCCAAAUUUAGUUGCGACUAAAAAACAGUACGAUCAGGCAAGUAAGCAUGCAAUAUUAAACAGUUGCCAAAUUAAAUUACUGGAG ..((((.((((((.((..(((((.......((((((....))))))......))))).)).))))))......(((((........)))))............)))).. ( -22.82) >DroSec_CAF1 10072 109 + 1 GCAUAGAACUUGUAUGUUUCGUAACCCAAAUUUAGUUGCGACUAAAUAACAGUACGAUCAAGCAAGUAAGCAUGCAAUAUUAAACAGUUGCCAAAUUAAAUUACUGAAG ((((.(.((((((.((..(((((......(((((((....))))))).....))))).)).))))))...))))).........((((..............))))... ( -22.74) >DroSim_CAF1 10199 109 + 1 GCCUAGAACUUGUAUGUUUCGUAACCCAAAUUUAGUUGCGACUAAAUAACAGUACGAUCAAGCAAGUAAGCAUGCAAUAUUAAACAGUUGCCAAAUUGAAUUACUGGAG ..((((.((((((.((..(((((......(((((((....))))))).....))))).)).))))))......(((((........)))))............)))).. ( -24.10) >consensus GCCUAGAACUUGUAUGUUUCGUAACCCAAAUUUAGUUGCGACUAAAUAACAGUACGAUCAAGCAAGUAAGCAUGCAAUAUUAAACAGUUGCCAAAUUAAAUUACUGGAG ..((((.((((((.((..(((((......(((((((....))))))).....))))).)).))))))......(((((........)))))............)))).. (-21.67 = -22.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:05 2006