Locus 4167

Sequence ID 2R_DroMel_CAF1
Location 13,706,980 – 13,707,071
Length 91
Max. P 0.900042
window6702

overview

Window 2

Location 13,706,980 – 13,707,071
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 87.98
Mean single sequence MFE -29.00
Consensus MFE -21.72
Energy contribution -23.12
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.75
SVM decision value 1.01
SVM RNA-class probability 0.900042
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13706980 91 - 20766785
GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCACCGUCCCGUCCUGACGUCCUGACGUCUCGACGUCCUGACAUUCGUUUGGCGGCCAGCG
(((.((((((.((..(........((.....))..(((.((((..(((((....)))))..))))....)))....)..))))))))))). ( -30.50)
>DroSec_CAF1 8125 91 - 1
GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCUCCGUCCCGUCCUGACGUCCUGACGUCCCGACGUCCGGACAUUUGUUUGGCGGCCAGCG
(((.((((((.((..((........((((..(........)..).)))((((.(((((....))))).))))...))..))))))))))). ( -34.70)
>DroSim_CAF1 8435 83 - 1
GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCUCCAUCCCGUCCUGA--------CGUCCCGACGUCCUGACAUUUGUUUGGCGGCCAGCG
(((.((((((.((..((.......((........))....(((..((--------(((....)))))..)))...))..))))))))))). ( -26.50)
>DroEre_CAF1 7784 89 - 1
GCUUGACUGCUCAUCCAUCAAAUUUGUCGUCCUCCGUC--GUCCUGACGUCCUGACGUUCUGACGUCCUGACAUUUGUUUGGCGGCCAGCA
(((.(.((((.((..((........(.((.....)).)--(((..((((((..(.....).))))))..)))...))..))))))).))). ( -24.40)
>DroYak_CAF1 8868 81 - 1
GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCUCCGUC--GUCCUGACGUCCUG--------ACGUCCUGACAUUUGUUUGGCGGCCAGCA
(((.((((((.((..((........(.((.....)).)--(((..(((((....--------)))))..)))...))..))))))))))). ( -28.90)
>consensus
GCUUGGCUGCUCAUCCAUCAAAUUUGUCGUCCUCCGUCCCGUCCUGACGUCCUGACGUCCCGACGUCCUGACAUUUGUUUGGCGGCCAGCG
(((.((((((.((..(.........(.((.....)).)..(((..((((((..........))))))..)))....)..))))))))))). (-21.72 = -23.12 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:22 2006