Locus 4166

Sequence ID 2R_DroMel_CAF1
Location 13,695,813 – 13,695,933
Length 120
Max. P 0.580849
window6701

overview

Window 1

Location 13,695,813 – 13,695,933
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.22
Mean single sequence MFE -34.23
Consensus MFE -16.36
Energy contribution -16.14
Covariance contribution -0.22
Combinations/Pair 1.36
Mean z-score -2.03
Structure conservation index 0.48
SVM decision value 0.09
SVM RNA-class probability 0.580849
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13695813 120 - 20766785
UCAUCCUUGUUGCGCUCUUUUUCGACCAUUUUCAUGGACAACAUCGCAUUGUCCAGCUGCUCCUGCAGUGAACCAACAUCGAUGUGGCUCACAUCCAAGUUGGCCAGAUUGAAAUAGACC
.......(((((.(.((.................(((((((.......)))))))(((((....))))))).))))))(((((.(((((.((......)).))))).)))))........ ( -34.50)
>DroVir_CAF1 3582 120 - 1
UCGAUUUUGUUGUGUUCCUGUUCCUUCAUUUUCAUGGCUAGAUUUGCAUUGUCCAGCUGCUCCUGCAGCGAGCCCACGUCGAUGCGACUCACGUCCAAAUUGGCCAGAUUGAAGUAGACA
...................(((.(((((...((.(((((((....((((((.(..(((((....)))))(....)..).))))))(((....)))....))))))))).)))))..))). ( -32.80)
>DroGri_CAF1 2851 120 - 1
UCAACUUUGGUGCAUUCCUGCUCCUUCAUUUUCAUUGCUAGUUUCGCAUUGUCCAGCUGCUCCUGCAGCGAGCCCACAUCGAUGUGGCUCACAUCCAAAUUGGCCAGAUUGAAGUAGACG
((.(((((((.(((....))).))............((((((((.(...(((...(((((....)))))(((((.(((....))))))))))).).))))))))......))))).)).. ( -35.30)
>DroWil_CAF1 353 120 - 1
UCUAACUUUUUAGUCUCUUUUUCCUUGAUUUUCAAGGAAAGGUUGGCAUUAUCCAGUUGCUCUUGCAAGGUGCCCACAUCAAUGCGGCUAACAUCCAGGUUAGCCAGGUUGAAAUAGACG
............((((..(((((((((.....)))))))))((.((((((......((((....)))))))))).)).(((((..(((((((......)))))))..)))))...)))). ( -39.40)
>DroAna_CAF1 7752 120 - 1
UCAAUCUUUCCGUACUCCUUUUCCUUCAUUUUCAGUGCCAGGUGGGCAUUAUCCAGCUGCUCCUGUAGCGAUCCCACAUCGAUGCGGCUGACAUCCAAGUUAGCCAAAUUGAAGUAGACC
...................(((.(((((.(((..((..(..(((((....(((..(((((....)))))))))))))...)..))(((((((......)))))))))).))))).))).. ( -31.60)
>DroPer_CAF1 6195 120 - 1
UCCACCUUUUUGAACUCCUUCUCCUUCAUUUUCACGGCUAGAUUUGCGUUGUCCAGCUGCUCCUGCAGUGAGCCAACAUCGAUCCGACUAACGUCCAGGUUAGCCAGGUUGAAGUAGACG
...................(((.(((((....(..((((.((((((.((((.(..(((((....)))))..).))))........(((....)))))))))))))..).))))).))).. ( -31.80)
>consensus
UCAACCUUGUUGCACUCCUUUUCCUUCAUUUUCAUGGCUAGAUUCGCAUUGUCCAGCUGCUCCUGCAGCGAGCCCACAUCGAUGCGGCUCACAUCCAAGUUAGCCAGAUUGAAGUAGACG
.............................(((((...........((((((....(((((....)))))..........))))))((((.((......)).))))....)))))...... (-16.36 = -16.14 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:21 2006