| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,670,743 – 13,670,833 |
| Length | 90 |
| Max. P | 0.966978 |
| Location | 13,670,743 – 13,670,833 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.66 |
| Mean single sequence MFE | -22.12 |
| Consensus MFE | -20.78 |
| Energy contribution | -20.42 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.966978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13670743 90 + 20766785 --UG--GUUACUCACAUCUGUGAAGCUCUUCUCGUCGCGCAGGUGACGGAACGAGGUCACCAUAUUCGUUUGAAAAUCGUUCCAUUUUAGAAAG --..--.....((.((((((((..((.......))..))))))))..(((((((..(((...........)))...)))))))......))... ( -24.70) >DroVir_CAF1 619 92 + 1 --AAGCUAUACUUACAUCUGUGAAGCUCUUCUCAUCGCGCAAGUGACGGAACGAGGUCACCAUAUUCGUUUGAAAAUCGUUCCAUUUUAGAAAA --.((((.(((........))).)))).((((..((((....)))).(((((((..(((...........)))...))))))).....)))).. ( -24.80) >DroPse_CAF1 589 94 + 1 UAUGUCGGUACUUACAUCUGUGAAACUCUUCUCAUCACGCAAGUGACGGAACGAGGUCACCAUAUUCGUCUGAAAAUCGUUCCAUUUAAGAAAG ......(((..((((....)))).))).((((..((((....)))).(((((((..(((...........)))...))))))).....)))).. ( -21.10) >DroGri_CAF1 579 88 + 1 ------AAUACUUACAUCUGUGAAGCUCUUCUCAUCGCGCAAGUGACGGAACGAGGUCACCAUAUUCGUUUGAAAAUCGUUCCAUUUUAGAAAA ------.....((((....)))).....((((..((((....)))).(((((((..(((...........)))...))))))).....)))).. ( -20.50) >DroMoj_CAF1 632 89 + 1 --AA---AAACUUACAUCUGUGAAACUCUUCUCAUCGCGCAAGUGACGGAACGAGGUCACCAUAUUCGUUUGAAAAUCGUUCCAUUUUAGAAAA --..---....((((....)))).....((((..((((....)))).(((((((..(((...........)))...))))))).....)))).. ( -20.50) >DroPer_CAF1 589 94 + 1 UGUGUCGGUACUUACAUCUGUGAAACUCUUCUCAUCACGCAAGUGACGGAACGAGGUCACCAUAUUCGUCUGAAAAUCGUUCCAUUUAAGAAAG ((((........))))(((.((((..........((((....)))).(((((((..(((...........)))...))))))).)))))))... ( -21.10) >consensus __UG__GAUACUUACAUCUGUGAAACUCUUCUCAUCGCGCAAGUGACGGAACGAGGUCACCAUAUUCGUUUGAAAAUCGUUCCAUUUUAGAAAA ...........((((....)))).....((((..((((....)))).(((((((..(((...........)))...))))))).....)))).. (-20.78 = -20.42 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:04 2006