Locus 4148

Sequence ID 2R_DroMel_CAF1
Location 13,642,189 – 13,642,288
Length 99
Max. P 0.858078
window6675

overview

Window 5

Location 13,642,189 – 13,642,288
Length 99
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 70.86
Mean single sequence MFE -24.48
Consensus MFE -15.82
Energy contribution -16.26
Covariance contribution 0.44
Combinations/Pair 1.11
Mean z-score -1.55
Structure conservation index 0.65
SVM decision value 0.82
SVM RNA-class probability 0.858078
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13642189 99 - 20766785
------AUCAAAUGGAGGUCAAGGAACUGUGUUAUAUAAAA------ACAAAAGCUGACCCCAAAUGGAGCUUAAUUGUGGCAUAAAUUGGGUGG-AACAAUCAACCCCCCC
------......(((.(((((........((((.......)------))).....))))))))...((.(((.......))).......((((.(-(....)).)))))).. ( -19.52)
>DroSec_CAF1 928 89 - 1
CUU---AUCAAAAGGGGGUCAAGGAAC--------------------ACAAAAGCUGACCCCAAAUGGAGCUCAAUUGUGGCAUAAAUUGGGUGGGCGCAAGCUACAACGCU
...---.((.....(((((((......--------------------........))))))).....))((((((((........)))))))).(((....)))........ ( -26.04)
>DroSim_CAF1 921 92 - 1
CUUAUUAUCAAAAGGGGGUCAAGGAAC--------------------ACAAAAGCUGACCCCAAAUGGAGCUUAAUUGUGGCAUAAAUUGGGUAGGCGCAAGCUACAACUCU
.......((.....(((((((......--------------------........))))))).....))((((((((........)))))))).(((....)))........ ( -23.84)
>DroYak_CAF1 915 98 - 1
--------------GCGGUCAAGGAGCUGUGUUAUGUAAAAUAGCUGACAAAAAUUGACCCCGAUUUGAGCUUAAUUGUGGCAUAAAUUGGGUGGGCGCAAGCUACGACACU
--------------..((((((.......(((((.((......)))))))....))))))((((((((.(((.......))).))))))))((((((....)))....))). ( -28.50)
>consensus
______AUCAAAAGGGGGUCAAGGAAC____________________ACAAAAGCUGACCCCAAAUGGAGCUUAAUUGUGGCAUAAAUUGGGUGGGCGCAAGCUACAACACU
..............(((((((..................................))))))).......((((((((........)))))))).(((....)))........ (-15.82 = -16.26 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:56 2006