Locus 4145

Sequence ID 2R_DroMel_CAF1
Location 13,635,169 – 13,635,266
Length 97
Max. P 0.966497
window6671

overview

Window 1

Location 13,635,169 – 13,635,266
Length 97
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.52
Mean single sequence MFE -26.14
Consensus MFE -10.60
Energy contribution -13.22
Covariance contribution 2.61
Combinations/Pair 1.16
Mean z-score -3.63
Structure conservation index 0.41
SVM decision value 1.60
SVM RNA-class probability 0.966497
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13635169 97 - 20766785
CAGCAAAGAAGAGGGAUCAAAUUGUAAUUGUCAAGUCUAACGUGGAAU---CCAAAGAGGAGGAGGCCAAUAAGGAGGUGGCAGUUGCAGCUGAGGAGAA
((((......((....))....(((((((((((..(((....(((..(---((........)))..)))....)))..)))))))))))))))....... ( -31.60)
>DroGri_CAF1 164540 80 - 1
CAGCUAAAAAGAAGGAUGCAGUGAUUGUGGUCAAAGCCAAUGUGGAGUCAACUAAAGAGACGGAGGCCAAAACGGAUGCA--------------------
................((((.......(((((....((.....)).(((.........)))...))))).......))))-------------------- ( -14.44)
>DroSec_CAF1 179028 97 - 1
CAGCAAAAAAGAGGGAUCAAGUUGUAAUUGUCAAAUCCAACGUGGAAU---CCAAAGAGGAGGAGGCAAAUAAGGAGGUGGCAGUUGCAGCUGAGGAGAA
................((.((((((((((((((..(((......(..(---((........)))..)......)))..))))))))))))))...))... ( -29.60)
>DroSim_CAF1 178991 97 - 1
CAGCAAAAAAGAGGGAUCAAGUUGUAAUUGUCAAAUCCAACGUGGAAU---CCAAAGAGGAGGACGCCAAUAAGGAAGUGGCAGUUGCAGCUGACGAGAA
((((......((....))....(((((((((((..(((....(((..(---((........)))..)))....)))..)))))))))))))))....... ( -31.80)
>DroEre_CAF1 174291 97 - 1
CAGCCAAAAAGAGGGAUCAAGUUGUAAUUGUCAAAGCCAACGUGGAAU---CCAAAGAGGAGGAUGCCAAUAAGGAAGUUCCAGUUGCUGCAGAGGAAAA
...((.....((....))..((.(((((((..(...((....(((.((---((........)))).)))....))...)..))))))).))...)).... ( -20.50)
>DroYak_CAF1 179049 97 - 1
CAGCAAAGAAGAGGGAUCAAGUUGUAAUUGUAAAAGCCAACGUGGAAU---CCAAAGAGGAGGAUGCCAAUAAGGAGGUGGCAGUUACAGCUGAGGAGAA
................((.((((((((((((....(((..(.(((.((---((........)))).)))....)..))).))))))))))))...))... ( -28.90)
>consensus
CAGCAAAAAAGAGGGAUCAAGUUGUAAUUGUCAAAGCCAACGUGGAAU___CCAAAGAGGAGGAGGCCAAUAAGGAGGUGGCAGUUGCAGCUGAGGAGAA
...................((((((((((((.....((....(((......((.....))......)))....)).....))))))))))))........ (-10.60 = -13.22 +   2.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:52 2006