Locus 4144

Sequence ID 2R_DroMel_CAF1
Location 13,633,984 – 13,634,074
Length 90
Max. P 0.646024
window6670

overview

Window 0

Location 13,633,984 – 13,634,074
Length 90
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.16
Mean single sequence MFE -21.37
Consensus MFE -13.51
Energy contribution -13.64
Covariance contribution 0.13
Combinations/Pair 1.24
Mean z-score -1.38
Structure conservation index 0.63
SVM decision value 0.23
SVM RNA-class probability 0.646024
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13633984 90 + 20766785
UUCUCCAUUGACAGCCUGCCUGGUUUAUUCGCAAAUGCGGAU--------------------AUCCUUC-AAUUUUGUCCUGCACCG------AGGUGCUCAGAAAUUUUGUAUUUA
((((.....(((((.......((..(((((((....))))))--------------------).))...-....)))))..((((..------..))))..))))............ ( -20.94)
>DroSec_CAF1 177835 90 + 1
UUAUCCAUAGACAGCCUGCCUGGUUUAUUCGCGAAUGCGGAU--------------------AUCCUUU-AAUUUUGUCCUGCACCG------AGGUGCUCAGAAAUUUUGUAUUUA
.........(((((.......((..(((((((....))))))--------------------).))...-....)))))..((((..------..)))).................. ( -19.44)
>DroSim_CAF1 177769 90 + 1
UUAUCCGUAGACAGCCUGCCUGGUUUAUUCGCAAAUGCGGAU--------------------AUCCUUC-AAUUUUGUCCUGCACCG------AGGUGCUCAGAAAUUUUGUAUUUA
......((((.....))))..((..(((((((....))))))--------------------).))...-..(((((....((((..------..)))).)))))............ ( -20.90)
>DroEre_CAF1 173080 93 + 1
UUCUCCUUAGACAGCGAGCCCGGUUUAUUCGCAAAUGCGGAU--------------------AUCCUUC-AAUUUUGUCCAGCACCG---ACGAGGUGCUCAAAAAUUUUGUAUUUA
.............(((((...((..(((((((....))))))--------------------).))...-..(((((...((((((.---....)))))))))))..)))))..... ( -23.30)
>DroYak_CAF1 177822 93 + 1
UUCUCCUUAGACAGCCUGCCUGGUUUAUUCGCAAAUGCGGAU--------------------AUCCUUC-AAUUUUGUCCUGCACCG---ACGAGGUGCUCAAAAAUUUUGUAUUUA
.........(((((.......((..(((((((....))))))--------------------).))...-....)))))..(((((.---....))))).................. ( -22.74)
>DroAna_CAF1 171181 117 + 1
UUCUCCUCUAACUCUGACUCUGACUCUGGCUCUGAUUCUGAUUCUGACUCGACUCUGACUCGAUUCUACAAAUUUUGUCCAGCACUCCAUAUCGGGUGCUAAGAAAUUUUGUAUUUA
..............(((.((.((.((.((.((.((.......)).)))).)).)).)).)))....((((((.(((.(..(((((((......))))))).).))).)))))).... ( -20.90)
>consensus
UUCUCCUUAGACAGCCUGCCUGGUUUAUUCGCAAAUGCGGAU____________________AUCCUUC_AAUUUUGUCCUGCACCG______AGGUGCUCAGAAAUUUUGUAUUUA
................................(((((((((((..................)))))......(((((....(((((........))))).))))).....)))))). (-13.51 = -13.64 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:51 2006