Locus 4143

Sequence ID 2R_DroMel_CAF1
Location 13,631,496 – 13,631,593
Length 97
Max. P 0.993057
window6669

overview

Window 9

Location 13,631,496 – 13,631,593
Length 97
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 81.24
Mean single sequence MFE -35.34
Consensus MFE -21.28
Energy contribution -22.36
Covariance contribution 1.08
Combinations/Pair 1.13
Mean z-score -3.13
Structure conservation index 0.60
SVM decision value 2.37
SVM RNA-class probability 0.993057
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13631496 97 + 20766785
CCAAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGAGCCAUCUCGGAUGUACGGAUACGGGUA-CCGGGUACCGGGUACCCAGGUAU--
((((((((((((.....)))))))(((((......))))).))))).((((((.((......)))))..(((((-((.(....).))))))).)))..-- ( -41.50)
>DroSec_CAF1 175319 83 + 1
CCAAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGACCCAUCUCGGAUGUACGGAUACGGGUA---------------ACCGGGUAU--
((((((((((((.....)))))))(((((......))))).)))))(((((((.((......)))))..((...---------------.))))))..-- ( -30.50)
>DroSim_CAF1 175279 83 + 1
CCAGAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGACCCAUCUCGGAUGUACGGAUACGGGUA---------------ACCGGGUAU--
((((((((((((.....)))))))(((((......))))).)))))(((((((.((......)))))..((...---------------.))))))..-- ( -30.60)
>DroEre_CAF1 170537 99 + 1
CCUAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGAUUCAUCUCAGAGGUACGGGUACCGGGUACCGGGUACCAGGUAU-CUGGUAUCU
(((.((((((((.....))))))))((((......))))..................)))...((((((((((((((.(....).)))))-))))))))) ( -38.30)
>DroYak_CAF1 175238 97 + 1
CCAAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGACCCAUCUCGGAGGUACGGGUGUAGGUUACCGGGUACCGGGUAC-CAGGUAU--
....((((((((.....))))))))((((......)))).((((((((((.((...))(((((.((((.....))))..))))))))).)-)))))..-- ( -35.80)
>consensus
CCAAAGAUGCCGGCAAACGGCGUCUGACAAACACAUGUUAAUUUGGACCCAUCUCGGAUGUACGGAUACGGGUA_CCGGGUACC_GGUAACCAGGUAU__
((((((((((((.....)))))))(((((......))))).)))))..(((((.((......)))))...(((.(((.(....).))).))).))..... (-21.28 = -22.36 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:50 2006