Locus 4142

Sequence ID 2R_DroMel_CAF1
Location 13,613,417 – 13,613,510
Length 93
Max. P 0.500000
window6668

overview

Window 8

Location 13,613,417 – 13,613,510
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 82.41
Mean single sequence MFE -34.83
Consensus MFE -27.11
Energy contribution -27.70
Covariance contribution 0.59
Combinations/Pair 1.40
Mean z-score -1.26
Structure conservation index 0.78
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13613417 93 - 20766785
GCCGCUUUGGUGGCUACUGGCCGAAUUUCAGGCGUAGGUGUU---UGAUUGGGUGCCAGGACUGCAAGCACUGAGGUCUGAUUUUCCGCUGGCGUA
(((((....)))))..(..((.(((..((((((.(.((((((---((.((((...)))).....)))))))).).))))))..))).))..).... ( -39.00)
>DroSec_CAF1 161195 93 - 1
GCAGCUUUGGUGGCAACUGGCCGAAUUUCGGGCGUAGGUGUU---UGAUUGGGUGCCAGGACUGCAAGCACUGAGGUCUGAUUUUCCGCUGGCGUA
.((((......(((.....)))(((..((((((.(.((((((---((.((((...)))).....)))))))).).))))))..))).))))..... ( -33.50)
>DroSim_CAF1 161088 93 - 1
GCAGCUUUGGUGGCAACUGGCCGAAUUUCGGGCGUAGGUGUU---UGAUUGGGUGCCAGGACUGCAAGCACUGAGUUCUGAUUUUCCGCUGGCGUA
.((((......(((.....)))(((..((((((...((((((---((.((((...)))).....))))))))..).)))))..))).))))..... ( -29.60)
>DroEre_CAF1 156314 93 - 1
GCCGCUUUGGUGGCAACCGGCCGAAUUUCGGGCGUAGGUGCU---GGAUUGGGUGCCAGGACUGCAAGCACUGAGGUCUGAUUUUCCGUUGGCGUA
(((((....)))))..(((((.(((..((((((.(.((((((---(..((((...))))..)....)))))).).))))))..))).))))).... ( -37.80)
>DroYak_CAF1 160907 93 - 1
GCCGCUUUGGUGGCAACCGGACGAAUUUCGGGCGUAGGUGCU---GGAUUGGGUGCCAAGACUGCAAGCAUUGAGGUCUGAUUUUCCGCUGGAGUA
(((((....)))))..((((..(((..((((((.(..(((((---(..((((...))))..)....)))))..).))))))..)))..)))).... ( -35.70)
>DroPer_CAF1 166329 96 - 1
GCUGCCUUGGUGGCUACGGGUCGCACCUCGGGCAUGGGGACUGAAAGAUUUGUUGCAGGUGAAGCUGACAAUGCUGUCCUCGUUCCCGCAGGCUUA
...((((..(((((.....)))))....((((.((((((((....((..(((((((.......)).)))))..)))))))))).)))).))))... ( -33.40)
>consensus
GCCGCUUUGGUGGCAACUGGCCGAAUUUCGGGCGUAGGUGCU___UGAUUGGGUGCCAGGACUGCAAGCACUGAGGUCUGAUUUUCCGCUGGCGUA
(((((....)))))..(((((.(((..((((((.(.((((((......((((...)))).......)))))).).))))))..))).))))).... (-27.11 = -27.70 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:49 2006