Locus 4137

Sequence ID 2R_DroMel_CAF1
Location 13,593,130 – 13,593,225
Length 95
Max. P 0.512264
window6661

overview

Window 1

Location 13,593,130 – 13,593,225
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 82.01
Mean single sequence MFE -17.37
Consensus MFE -12.34
Energy contribution -12.90
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.56
Structure conservation index 0.71
SVM decision value -0.04
SVM RNA-class probability 0.512264
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13593130 95 - 20766785
UGUUUACGCAGCAGCAGUGAUGAUCACAUUUUGUGUGGCUUAUAUAUUACGAUUAUAUAAUGGCUUGUAGUAGUUAAAACAAAUGCAUAAUACAU
.......((....)).(((.....)))....(((((.(((((((((.......)))))))(((((......)))))........))...))))). ( -14.30)
>DroSec_CAF1 146216 88 - 1
UGUUUACGCAGCAGCAGUGAUGAUCACAUUAUAU-------AAUGAUGAUCAUUAUAUAAAUGGUUGUAGUGAUUAAUAUAAAUACGUAAAACAU
(((((.(((.(((((.(((.....))).((((((-------((((.....))))))))))...))))).))).....(((......)))))))). ( -20.40)
>DroSim_CAF1 144584 88 - 1
UGUUUACGCAGCAGCAGUGAUGAUCACAUUAUAU-------AAAGAUGAUCAUUAUAUAAAUGGUUGUAGUGAUUAAUACAAAUACAUAAAACAU
(((((..((....)).((((((((((..((....-------.))..))))))))))....(((.(((((........)))))...))).))))). ( -17.40)
>consensus
UGUUUACGCAGCAGCAGUGAUGAUCACAUUAUAU_______AAAGAUGAUCAUUAUAUAAAUGGUUGUAGUGAUUAAUACAAAUACAUAAAACAU
(((((..((....)).(((.....)))...................(((((((((((........))))))))))).............))))). (-12.34 = -12.90 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:42 2006