Locus 4134

Sequence ID 2R_DroMel_CAF1
Location 13,584,183 – 13,584,277
Length 94
Max. P 0.718285
window6658

overview

Window 8

Location 13,584,183 – 13,584,277
Length 94
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 88.73
Mean single sequence MFE -30.13
Consensus MFE -26.41
Energy contribution -26.63
Covariance contribution 0.23
Combinations/Pair 1.17
Mean z-score -1.59
Structure conservation index 0.88
SVM decision value 0.39
SVM RNA-class probability 0.718285
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13584183 94 - 20766785
------------------CGGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAGGCUUCGGUCAAUUGAUGGCC
------------------.((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) ( -29.00)
>DroSec_CAF1 137270 94 - 1
------------------CGGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAGGCUUCGGUCAAUUGAUGGCC
------------------.((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) ( -29.00)
>DroSim_CAF1 135678 94 - 1
------------------CGGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAGGCUUCGGUCAAUUGAUGGCC
------------------.((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) ( -29.00)
>DroEre_CAF1 132904 94 - 1
------------------CAGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAAGCUUCGGUCAAUUGAUGGCC
------------------........(((((.((((((((.((((((((...))))))))......(....)......))))))))....)))))..(((((.....))))) ( -27.40)
>DroYak_CAF1 137030 94 - 1
------------------CGAAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAAGCUUCGGUCAAUUGAUGGCC
------------------.((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) ( -29.60)
>DroAna_CAF1 129730 112 - 1
GGCAGCAGGAUGCGCCCAAGGAGGUAAGCUUGCAAUUGCACUCGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCCCGAAGCUCUUGACAAUUGAUGGGC
.(((......)))(((((...(((....))).((((((((...((((((...)))))).....((((((((............))))))))......)).)))))).))))) ( -36.80)
>consensus
__________________CGGAGUUCAGCUUACGAUUGCACUUGUCCUGUUACAGGACAAUUAUCGGGCGACACAAAUUGCAAUUGCUCGAAGCUUCGGUCAAUUGAUGGCC
...................((((((..((........))..((((((((...))))))))...((((((((............))))))))))))))(((((.....))))) (-26.41 = -26.63 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:40 2006