| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,579,149 – 13,579,250 |
| Length | 101 |
| Max. P | 0.574735 |
| Location | 13,579,149 – 13,579,250 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.36 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -13.16 |
| Energy contribution | -12.88 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13579149 101 + 20766785 ----CAUGAGCAAAUUAAAUAAAUU-UUGCAAUUAAAAGUUGCACUCCUUCG--GAAGCAUUUGUCAACGCAAAUAAGCGUAAAUUAAGUUUGUUUUGCUUC-UG------CAUU----- ----((.(((((((.(((((....(-((((........((((.((.....(.--...).....))))))((......)))))))....))))).))))))).-))------....----- ( -20.90) >DroVir_CAF1 125794 112 + 1 --AAUGCUGGCAAAUCAAAUAAAUU-UUGCAAUUAAAAGUUGCACUCCUUCG--AAAACAUUUGUCAACGCAAAUAAACGUAAAUUAAGUUUAUUUUGCAUC-UCGUUGCGCAAAUUU-- --..(((((((((((..........-.((((((.....))))))........--.....))))))))..((((((((((.........))))).)))))...-.......))).....-- ( -21.25) >DroGri_CAF1 109152 114 + 1 GAGACGUUGGCAAAUCAAAUAAAUU-UUGCAAUUAAAAGUUGCACUCCUUCG--AAAACAUUUGUCAACGUAAAUAAACGUAAAUUAAGUUUAUUUUGCAUC-UCGUUGCGCAAAUUU-- ((((.((((((((((..........-.((((((.....))))))........--.....))))))))))((((((((((.........))))).))))).))-)).............-- ( -25.25) >DroSec_CAF1 132221 101 + 1 ----CAUGAGCAAAUUAAAUAAAUU-UUGCAAUUAAAAGUUGCACUCCUUCG--GAAGCAUUUGUCAACGCAAAUAAGCGUAAAUUAAGUUUGUUUUGCUUC-UG------CCUU----- ----((.(((((((.(((((....(-((((........((((.((.....(.--...).....))))))((......)))))))....))))).))))))).-))------....----- ( -20.90) >DroSim_CAF1 130598 101 + 1 ----CAUGAGCAAAUUAAAUAAAUU-UUGCAAUUAAAAGUUGCACUCCUUCG--GAAGCAUUUGUCAACGCAAAUAAGCGUAAAUGAAGUUUGUUUUGCUUC-UG------CCUU----- ----((.(((((((.(((((.....-.((((((.....))))))((.(....--).))(((((....((((......)))))))))..))))).))))))).-))------....----- ( -21.50) >DroMoj_CAF1 152782 120 + 1 GAGUGGCUGGCAAAUCAAAUAAAUUUUUGCAAUUAAAAGUUGCACUCGUUCGGAAAAACAUUUGUCAACACAAAUAAACGUAAAUUAAGUUUAUUUUGCAUUUUCUUUGCGCCAGUCAGC ...((((((((................((((((.....))))))...((..((((((..((((((....))))))....(((((.((....)).))))).))))))..)))))))))).. ( -30.10) >consensus ____CAUGAGCAAAUCAAAUAAAUU_UUGCAAUUAAAAGUUGCACUCCUUCG__AAAACAUUUGUCAACGCAAAUAAACGUAAAUUAAGUUUAUUUUGCAUC_UC______CAAU_____ .........(((((..((((.......((((((.....))))))...............((((((....)))))).............))))..)))))..................... (-13.16 = -12.88 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:35 2006