| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,436,350 – 2,436,463 |
| Length | 113 |
| Max. P | 0.746765 |
| Location | 2,436,350 – 2,436,463 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.47 |
| Mean single sequence MFE | -33.16 |
| Consensus MFE | -19.85 |
| Energy contribution | -20.77 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2436350 113 - 20766785 CUGUGCCGAAGAACAAGUCCAAUGUGUUUUGGUAGUAUAACGCAGCCAGCUGUUCUUUAGGCUCUUGUUUGAUUCCGGCAAUAGACUCCAAAACUUGGCUAAAA-CGG---AAGA--CA ..(.(((((((((((.((....((((((..........))))))....)))))))))).))).).((((...(((((....(((...(((.....))))))...-)))---))))--)) ( -27.40) >DroVir_CAF1 67809 118 - 1 AGCCGCUAAAGAACAAGUCCAACGUGUUUUGAUAGUAAAGCUCAGCCAGCUGCUCCUUGGGCUGCUGUUUGAUGCCCGCAAUUGCCUCCAAGACUUGACUGAAA-UGUUGCGAGACUCA ...(((.........((((......((((((........((((((.((((.(((.....))).)))).)))).))..((....))...))))))..))))....-....)))....... ( -27.93) >DroPse_CAF1 43854 113 - 1 UUCUGCUGAAGAACACAUCCAAAGUGUUUUGAUAGUAGAUCUCGGCCAGCUUCUCCUUGGGCUCCUGCUUAAUGCCCGCAAUGGCCUCGAGAACUUGGCUGAAA-UGA---AAAA--UA .(((((((.(((((((.......)))))))..)))))))..((((((((.(((((...(((((..(((.........)))..))))).))))).))))))))..-...---....--.. ( -41.30) >DroGri_CAF1 21702 116 - 1 AUUUGCUAAAGAACAGAUCUAACGUGUUCUGAUAGUAAAUCUCGGCCAGCUUCUCCUUGGGCUCCUGUCUAAUGCCCGCAAUCGCCUCCAGUACUUGGCUGAAAGUGCAGUAAUC--C- ((((((((.((((((...(....)))))))..)))))))).((((((((.........((((...........))))((....)).........)))))))).............--.- ( -29.40) >DroYak_CAF1 48376 113 - 1 CUUUGCUGAAGAACAAGUCCAAUGUGUUUUGGUAGUAUAACUCUGCCAGCUCUUCUUUGGGCUCCUCUUUGAUUCCGGCAAUGGCCUCCAAAACUUGGCUGAAA-CGG---AAAA--CA .......(((((...(((((((...(..(((((((.......)))))))..)....)))))))..)))))..(((((.....((((..........))))....-)))---))..--.. ( -31.60) >DroPer_CAF1 43434 113 - 1 UUCUGCUGAAGAACACAUUCAAAGUGUUUUGAUAGUAGAUCUCGGCCAGCUUCUCCUUGGGCUCCUGCUUAAUGCCCGCAAUGGCCUCGAGAACUUGGCUGAAA-UGA---AAAA--UA .(((((((.(((((((.......)))))))..)))))))..((((((((.(((((...(((((..(((.........)))..))))).))))).))))))))..-...---....--.. ( -41.30) >consensus AUCUGCUGAAGAACAAAUCCAAAGUGUUUUGAUAGUAAAUCUCGGCCAGCUUCUCCUUGGGCUCCUGUUUAAUGCCCGCAAUGGCCUCCAAAACUUGGCUGAAA_UGA___AAAA__CA .(((((((.((((((.........))))))..)))))))..((((((((.........(((((..(((.........)))..))))).......))))))))................. (-19.85 = -20.77 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:00 2006