Locus 4129

Sequence ID 2R_DroMel_CAF1
Location 13,571,945 – 13,572,037
Length 92
Max. P 0.996402
window6649

overview

Window 9

Location 13,571,945 – 13,572,037
Length 92
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 71.53
Mean single sequence MFE -30.00
Consensus MFE -12.69
Energy contribution -13.30
Covariance contribution 0.61
Combinations/Pair 1.26
Mean z-score -2.78
Structure conservation index 0.42
SVM decision value 2.69
SVM RNA-class probability 0.996402
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13571945 92 - 20766785
UGGCAUACUGAUAUGUCUUAUCUGCAUCAAGAUAGGAGAAAAGCCCCUGCGAUCGCUAAG----------U----------CUGUGGCACCCAAAG----ACUUGGCAUAAAUGCC
.(((((...(((.(.((((((((......)))))))).)...((....)).)))((((((----------(----------((.(((...))).))----)))))))....))))) ( -32.70)
>DroSec_CAF1 118717 92 - 1
UGCCGUACUGAUACGUCUUAUCUGCAUCAAGAUAGGAGAAAAGCCCCAGCGAUCGCUAAG----------U----------CUGUGGCACCCACAG----ACUUGGCAUAAAUACU
.((((((....))))((((((((......))))))))...........))....((((((----------(----------((((((...))))))----)))))))......... ( -33.50)
>DroSim_CAF1 123217 92 - 1
UGCCGUACUGAUACGUCUUAUCUGCAUCAAGAUAGGAGAAAAGCCCCAGCGAUCGCUAAG----------U----------CUGUGGCACCCACAG----ACUUGGCAUAAAUACG
...((((..(((.(.((((((((......)))))))).....((....))))))((((((----------(----------((((((...))))))----))))))).....)))) ( -34.50)
>DroEre_CAF1 120607 92 - 1
UGUCACACUGAUACGUCUUAUCUGCAUUAAGAUAGGAGGAAAGCCCCUCCGAUUCCUAAG----------C----------CUAUGGCACCCACAG----AGUAGGCAUAAAUACG
((((((.(((....(((.(((((......)))))(((((......))))))))......(----------(----------(...))).....)))----.)).))))........ ( -23.50)
>DroYak_CAF1 124554 92 - 1
UGUCAUACUGAUACGUCUUAUCUGCACUAAGAUAGGAGAAAAGCCCCUGCGAUCGCUAAG----------U----------CUGUGGCACCCACAG----AGUUGGCAUAAAUACG
((((.....))))..((((((((......))))))))((...((....))..))(((((.----------(----------((((((...))))))----).)))))......... ( -28.80)
>DroPer_CAF1 124903 111 - 1
UCCAUUAGUGAUUGUCUUUAUCAGUGGCAAGAUAAGGGG-----CCCCUGAGUCCCAGUGGUCUUGUAAAUUCAUAGAUAAUUGGUGUUCCCUCAUUGUUACGUGCCAUAAAAGCA
........((((.......))))((((((.(((((((((-----.....(((..(((((.((((((......)).)))).)))))..))))))).)))))...))))))....... ( -27.00)
>consensus
UGCCAUACUGAUACGUCUUAUCUGCAUCAAGAUAGGAGAAAAGCCCCUGCGAUCGCUAAG__________U__________CUGUGGCACCCACAG____ACUUGGCAUAAAUACG
...............((((((((......)))))))).....(((...((....)).........................((((((...))))))........)))......... (-12.69 = -13.30 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:31 2006