| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,559,581 – 13,559,701 |
| Length | 120 |
| Max. P | 0.717620 |
| Location | 13,559,581 – 13,559,701 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.00 |
| Mean single sequence MFE | -47.62 |
| Consensus MFE | -37.98 |
| Energy contribution | -38.86 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13559581 120 + 20766785 CUGCUGCUGCUCCGCCUGGGCGGUCAAAUUGGCGAUCUGGGCAUUGGCGGUGGUGAUGCAGUCCUGAUAGGAACUCGAGAAAGUGGCAGCCACUUGAUUCAGCAUAGGCAUGUAUAAGUU ..((..(((((..(((..((..(((.....)))..))..)))...)))))..)).((((..(((.....)))....(((.((((((...))))))..))).))))............... ( -38.60) >DroSec_CAF1 107152 120 + 1 CUGCUGCUGCUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGGUGAUGCAGUCCUGAUAGGAACUAGAGAAAGUGGCAGCCACUUGGUUCAGCAUGGGCAUGUAUAGGUU ..((..(((((..(((..(((.(((.....))).)))..)))...)))))..)).(((((((((((....((((((.....(((((...)))))))))))..)).)))).)))))..... ( -49.90) >DroSim_CAF1 111340 120 + 1 CUGCUGCUGCUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGGUGAUGCAGUCCUGAUAGGAACUCGAGAAAGUGGCAGCCACUUGGUUCAGCAUGGGCAUGUAUAUGUU ..((..(((((..(((..(((.(((.....))).)))..)))...)))))..)).(((((((((((....(((((.....((((((...)))))))))))..)).)))).)))))..... ( -49.80) >DroEre_CAF1 108116 120 + 1 CUGCUGCUCUUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGUUGAUGCAGUCCUGAUAGGAGGACGAGAAAGUGGCCGCCAGUUGGUUCAGCAGGGGCAUGUAAGUGUU ((((((..((.((((....))))...(((((((((((...((((..((...))..)))).(((((......)))))........)))))))))))))..)))))).(((((....))))) ( -52.90) >DroYak_CAF1 112981 120 + 1 CUGCUGCUGCUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGUUGAUGCAUUCCUGAUAGUUGGCCGAGAAGGUGGCAGCCACUUGGUUCAGCAUGGGCAUGUAUAUGUU .....((((((..(((..(((.(((.....))).)))..)))...))))))....((((((.(((.((.((((((((((..(((....))).))))).)))))))))).))))))..... ( -46.90) >consensus CUGCUGCUGCUCCGCCUGGGCGGUCAGAUUGGCGGUCUGGGCAUUGGCGGUGGUGAUGCAGUCCUGAUAGGAACUCGAGAAAGUGGCAGCCACUUGGUUCAGCAUGGGCAUGUAUAUGUU .((((((((((..(((..(((.(((.....))).)))..)))...))))))....((((..(((.....)))....(((.((((((...))))))..))).)))).)))).......... (-37.98 = -38.86 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:30 2006