Locus 4123

Sequence ID	2R_DroMel_CAF1
Location	13,536,708 – 13,536,800
Length	92
Max. P	0.817885

overview

Window 9

Location	13,536,708 – 13,536,800
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	83.59
Mean single sequence MFE	-31.56
Consensus MFE	-20.26
Energy contribution	-21.58
Covariance contribution	1.32
Combinations/Pair	1.24
Mean z-score	-2.23
Structure conservation index	0.64
SVM decision value	0.67
SVM RNA-class probability	0.817885
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13536708 92 + 20766785
AGGUCCAUGGUGGGGAAACACCACCACUCAAGGUCCAUGGUGGGGAAACACCACUACUCAAGGUCCAUGGUGGGGAAACACCACUACUCAAG
.((.((.(((((((....).))))))...........(((((((....).)))))).....)).)).(((((((....).))))))...... ( -39.70)
>DroSim_CAF1 88314 92 + 1
AGGUCCAUGGUGGGGCAAUAACUCUACUCAAGGUCCAUGGUGGGGAAACACCACUACUCAAGGUCCAUGGUGGGGAAACACUACUACUCAAG
.((.((.((((((((......)))))).)).)).)).(((((((....).))))))...........(((((((....).))))))...... ( -32.60)
>DroEre_CAF1 85542 92 + 1
AGGUCCAUGGUGGGGAAACAAUUCAACAGAAGGUCCAUGGUGGGGAAACAACUCAACCGAAGGUCCAUGGUGGGGAAACAACUCAACCGAAG
.(((((((.(((((((.....(((....)))..))).(((((((.......))).)))).....)))).))))(....)......))).... ( -26.00)
>DroYak_CAF1 88583 92 + 1
AGGUCCAUGGUGGGGAAACAACUCGACGGAUGGUCCAUGGUGGGGAAACAACUCUACUCAAGGUCCCUGGUGGGGAAACAACUCUACUCAAG
.((.((((.((.(((......))).)).).))).)).((((((((......(((((((..((....)))))))))......)))))).)).. ( -27.40)
>DroAna_CAF1 86266 92 + 1
AGGACCCUGGUGGGGCAACAACUCUACCGAAGGACCCUGGUGGGGCAACAACUCUACCGAAGGACCCUGGUGGGGCAACAACUCUACUUCUG
.(((....(((((((......(((((((..(((..((((((((((......)))))))..)))..))))))))))......)))))))))). ( -32.10)
>consensus
AGGUCCAUGGUGGGGAAACAACUCUACUGAAGGUCCAUGGUGGGGAAACAACUCUACUCAAGGUCCAUGGUGGGGAAACAACUCUACUCAAG
........(((((((......(((((((...((.((..(((((((......)))))))...)).))..)))))))......))))))).... (-20.26 = -21.58 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:21 2006