Locus 4120

Sequence ID 2R_DroMel_CAF1
Location 13,535,736 – 13,535,838
Length 102
Max. P 0.632752
window6634

overview

Window 4

Location 13,535,736 – 13,535,838
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -36.82
Consensus MFE -26.00
Energy contribution -25.70
Covariance contribution -0.30
Combinations/Pair 1.42
Mean z-score -1.64
Structure conservation index 0.71
SVM decision value 0.20
SVM RNA-class probability 0.632752
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13535736 102 - 20766785
GGCUGACUCUGGGCGAUGCAAUUGGCCAGGGCGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCUACUUCACGGAAAAUGCAGGCACUGUAACGGCGA
.((((..(((((.((((...)))).)))))(((((.((.((((....)))))).))).((((.((((((.......)))))).)))))).......)))).. ( -34.80)
>DroSec_CAF1 83958 102 - 1
GGCUGACUCUGGGCGAUGCAAUUUGCCAGAGCGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCCACUUCUCGGAAAAUGCAGGCUCUGUAACGGCGA
.((((......(((((......)))))((((((((.((.((((....)))))).))).((((.((((((.......)))))).)))))))))....)))).. ( -40.30)
>DroSim_CAF1 86915 102 - 1
GGCUGACUCUGGGCGAUGCAAUUGGCCAGAGCGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCCACUUCACGGAAAAUGCAGGCGCUGUAACGGCGA
.((((..(((((.((((...)))).)))))(((((.((.((((....)))))).))).((((.((((((.......)))))).)))))).......)))).. ( -38.30)
>DroEre_CAF1 84531 102 - 1
GGCUGACUCUGGGCGAUGCAAUUGGCCAGAGAGAUGGAAGCUGCAUUCAGCUUGAUCAGUGCCUUUUCCACUUCACGGAGAAUGCAGGCACUGCGGCGGCGA
.((((.((((((.((((...)))).))))))......((((((....))))))...(((((((((((((.......)))))....))))))))))))..... ( -40.70)
>DroYak_CAF1 87413 102 - 1
GGCUGACUCUGGGCGAUGCAAUUGGCCAGAGAGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCCACUUCGCGGAAAAUGCAGGCAUUGCGGCGGCGA
.((((.((((((.((((...)))).)))))).((((.((((((....)))))).....((((.((((((.......)))))).)))).)))).))))..... ( -38.90)
>DroAna_CAF1 85327 94 - 1
--------CUGGGCAAGGCAACUGGCCAGACUUUUUUCUGCGGCAUCCAGUCUCAAGACCGCCUUUUCGACUUCACGCAGGUAACAAGCCCACUUGCGGCGG
--------((((.((.(....))).)))).......((((.(((.....))).).)))(((((.....(....)..((((((.........))))))))))) ( -27.90)
>consensus
GGCUGACUCUGGGCGAUGCAAUUGGCCAGAGCGAUGGAAGCUGCAUUCAGCUUGAUCACUGCCUUUUCCACUUCACGGAAAAUGCAGGCACUGUAACGGCGA
......((((((.(((.....))).)))))).(((.((.((((....)))))).)))..((((((((((.......))))))(((((...)))))..)))). (-26.00 = -25.70 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:17 2006