Locus 4119

Sequence ID 2R_DroMel_CAF1
Location 13,535,112 – 13,535,224
Length 112
Max. P 0.648599
window6633

overview

Window 3

Location 13,535,112 – 13,535,224
Length 112
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.48
Mean single sequence MFE -35.90
Consensus MFE -24.49
Energy contribution -24.69
Covariance contribution 0.19
Combinations/Pair 1.09
Mean z-score -1.26
Structure conservation index 0.68
SVM decision value 0.24
SVM RNA-class probability 0.648599
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13535112 112 - 20766785
UUGGCAUU--CUCACCUGAGCACCGACGAGCAGCAGACAAACUGCUAAAAUUUUGCAGGGAACCUCCAUCAUGGCGGUUCAAUUCGUUUCUGAGGUGGCUUCGCUGGCAGGUGA
........--.(((((((..((.(((.(.((..((((....((((.........)))).(((((.((.....)).)))))........))))..))..).))).)).))))))) ( -36.90)
>DroPse_CAF1 80359 112 - 1
--GGCCUUCUCUUACCUGAGCGCUGACGAGCAGCGAGCACACUGCUAAUAUUUUGCAGAGAACCUCCAUCAGGGCGGUUCAAGUUAUUUCUGACAGUCUGCCAGUAUCAGCUGA
--.((...(((......)))(((((.....))))).)).....(((.(((((..((((((((((.((.....)).)))))..((((....))))..))))).))))).)))... ( -33.30)
>DroEre_CAF1 83925 112 - 1
UUGGUAUG--CUCACCUGAGCGCCGACGAGCAGCAGACACACUGCUAAAAUUUUGCAGGGAACCUCCAUCAUGGCGGUUCAAAUCGUUUCUGAGGUGGCUUCGCUGGCAGGUGA
.......(--(((....))))((((.(((((..((((.((.((((.........)))).(((((.((.....)).))))).....)).)))).....)).))).))))...... ( -39.30)
>DroYak_CAF1 86794 112 - 1
UUGGCAUU--CUCACCUGAGCGCCGACGAGCAGCAGACAAACUGCUAAAAUUUUGCAGGGAACCUCCAUCAUGGCGGUUCAGUUCGUUUCUGAGUUCGCUUCGCUGGCAGGUGA
........--.(((((((((((..(.(((((..((((....((((.........)))).(((((.((.....)).)))))........)))).))))))..))))..))))))) ( -39.80)
>DroAna_CAF1 84732 111 - 1
CCUGAAUA--UUUACCUGGGCACUGACUAGCAGUGAGCACACUAAUAAAAUUUUGCAGAGAACCUCCAUCUUGGGGGUUCGGUUCGUUUCUGU-UCGAUUUCAAUGGCAGGUGA
........--.(((((((..(((((.....)))))......(((.(.(((((..(((((((((((((.....))))))))........)))))-..))))).).)))))))))) ( -32.80)
>DroPer_CAF1 88654 112 - 1
--GGCCUUCUCUUACCUGAGCGCUGACGAGCAGCGAGCACACUGCUAAUAUUUUGCAGAGAACCUCCAUCAGGGCGGUUCAAGUUAUUUCUGACAGUCUGCCAGUAUCAGCUGA
--.((...(((......)))(((((.....))))).)).....(((.(((((..((((((((((.((.....)).)))))..((((....))))..))))).))))).)))... ( -33.30)
>consensus
UUGGCAUU__CUCACCUGAGCGCCGACGAGCAGCAAACACACUGCUAAAAUUUUGCAGAGAACCUCCAUCAUGGCGGUUCAAUUCGUUUCUGAGAUGGCUUCACUGGCAGGUGA
...........(((((((.(((......(((((........))))).......)))...(((((.((.....)).)))))...........................))))))) (-24.49 = -24.69 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:16 2006