Locus 4115

Sequence ID 2R_DroMel_CAF1
Location 13,524,407 – 13,524,508
Length 101
Max. P 0.994914
window6626

overview

Window 6

Location 13,524,407 – 13,524,508
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 90.03
Mean single sequence MFE -28.92
Consensus MFE -26.62
Energy contribution -26.97
Covariance contribution 0.35
Combinations/Pair 1.15
Mean z-score -2.29
Structure conservation index 0.92
SVM decision value 2.52
SVM RNA-class probability 0.994914
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13524407 101 - 20766785
AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGUGCUCAGGCAACAGAAAUCGCCGGCCAUUUAUACGGAUACU
.((((..(((..((((((((((((.....(((..((.....))...)))....)))))))))))).)))..)))).....(((..........)))..... ( -30.90)
>DroSec_CAF1 72784 101 - 1
AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGCGCUCAGGCAACAGAAAUCGCCGGCCAUUUAUACGGAUACU
.((((..(((..(((..(((((((.....(((..((.....))...)))....)))))))..))).)))..)))).....(((..........)))..... ( -27.10)
>DroSim_CAF1 75635 101 - 1
AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGUGCUCAGGCAACAGAAAUCGCCGGCCAUUUAUACGGAUACU
.((((..(((..((((((((((((.....(((..((.....))...)))....)))))))))))).)))..)))).....(((..........)))..... ( -30.90)
>DroEre_CAF1 73250 101 - 1
AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGUGCUCAGGCAACAGAAAUCGCCGCCCAUUUAUACGGAUACU
....(((((...((((((((((((.....(((..((.....))...)))....)))))))))))).(....).......)))))((........))..... ( -30.00)
>DroYak_CAF1 75711 94 - 1
AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGG-------CAAGUGUAACUUUUUAUGUGCCCAGGCAACAGAAAUCGCCGGCAAUUUAUACGGAUACU
.((((..(((..((((((((((((.....(((...-------....)))....)))))))))))).)))..)))).....(((..........)))..... ( -29.80)
>DroAna_CAF1 73373 96 - 1
AUCUGCGGCUGCGGGUACAUA-----AAAGUAAGGGUCUCUCCAAGUGUAACUUUUUUCAUGCCCCGGCAACAGAAAUUGCUGGCAAUUUAUACAGAUACA
.((((..((((.(((((...(-----(((((...((.....)).......))))))....)))))))))..))))(((((....)))))............ ( -24.80)
>consensus
AUCUGCGGCUGCGGGUACAUAAAAUAAAAGCAAGGCACCCAGCAAGUGUAACUUUUUAUGUGCUCAGGCAACAGAAAUCGCCGGCCAUUUAUACGGAUACU
.((((..(((..((((((((((((.....(((..((.....))...)))....)))))))))))).)))..)))).....(((..........)))..... (-26.62 = -26.97 +   0.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:09 2006