Locus 4101

Sequence ID 2R_DroMel_CAF1
Location 13,494,335 – 13,494,430
Length 95
Max. P 0.855725
window6609

overview

Window 9

Location 13,494,335 – 13,494,430
Length 95
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 78.31
Mean single sequence MFE -26.94
Consensus MFE -18.11
Energy contribution -18.62
Covariance contribution 0.50
Combinations/Pair 1.19
Mean z-score -1.66
Structure conservation index 0.67
SVM decision value 0.81
SVM RNA-class probability 0.855725
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13494335 95 + 20766785
UCAUCGCUGCUGUACGUUGUUAAGCCGACCGUAAGCAGAUGAUAAUCCUUUUUGCGUAUCCACGAUACCU---------AAAAAU-------AGAUGGAUGGGUU-------GCGGGU
..(((((((((.(((((((......))).))))))))).))))...(((....((.(((((((.......---------......-------.).)))))).)).-------..))). ( -23.34)
>DroVir_CAF1 4265 103 + 1
UCGUCGCUGCUGUAGGUUGUUAGGCCGACCGUAAGCAGAUGAUAAUCCUUUUUGCGUAUCCAGGAUACCUGCCGAGUACAAAAAA-------UUAAGGAAGAAGA------AGCAG--
..(((((((((...(((((......)))))...))))).))))..((((((((..((((.((((...))))....))))..))).-------..)))))......------.....-- ( -25.70)
>DroGri_CAF1 4532 93 + 1
UCGUCGCUGCUGUAGGUUGUUAAGCCGACCGUAAGCAGAUGAUAAUCCUUUUUGCGUAUCCAGGAUACCU---------AAAAGC-------AGAAGGAAAGAGA------UAAA---
..(((((((((...(((((......)))))...))))).))))..(((((((.(((((((...)))))..---------....))-------)))))))......------....--- ( -27.20)
>DroWil_CAF1 4733 95 + 1
UCAUCGCUGCUAUAGGUUGUUAAGCCGACCGUAAGCAGAUGAUAAUCCUUUUUGCGUAUCCAUGAUACCU---------ACAAACGAAAAGUAGAAAGAGGGAU--------------
..(((((((((...(((((......)))))...))))).)))).(((((((((..(((((...)))))((---------((.........)))).)))))))))-------------- ( -28.50)
>DroAna_CAF1 44498 102 + 1
UCAUCGCUGCUAUAGGUUGUUAAGCCGACCGUAAGCAGAUGAUAAUCCUUUUUGCGUAUCCACGAUACCU---------AAAAAU-------AGAUGAAUGGGUGAGAAAAAGAGGGU
..(((((((((...(((((......)))))...))))).)))).(((((((((...((((((...((.((---------(....)-------)).))..))))))....))))))))) ( -29.50)
>DroPer_CAF1 48339 95 + 1
UCGUCGCUGCUAUACGUUGUUAAGCCGACCGUAAGCAGAUGAUAAUCCUUUUUGCGUAUCCAUGAUACCU---------AGAAAU-------GGAAGGAAGGAGA-------ACGGCA
..(((((((((.(((((((......))).))))))))).......((((((((..(((((...)))))((---------(....)-------)).))))))))..-------.)))). ( -27.40)
>consensus
UCAUCGCUGCUAUAGGUUGUUAAGCCGACCGUAAGCAGAUGAUAAUCCUUUUUGCGUAUCCACGAUACCU_________AAAAAU_______AGAAGGAAGGAGA_______GCGG__
..(((((((((...(((((......)))))...))))).))))..((((((((..(((((...)))))...........................))))))))............... (-18.11 = -18.62 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:52 2006