Locus 410

Sequence ID 2R_DroMel_CAF1
Location 2,430,457 – 2,430,561
Length 104
Max. P 0.640712
window800

overview

Window 0

Location 2,430,457 – 2,430,561
Length 104
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 92.68
Mean single sequence MFE -35.44
Consensus MFE -27.46
Energy contribution -27.77
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.90
Structure conservation index 0.77
SVM decision value 0.22
SVM RNA-class probability 0.640712
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2430457 104 - 20766785
ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCGCGUCAAGUUGGUUGCGGGAGGGGCAGUGGGU----GUUGGGGAUGGGUGGCAUAAGAGGCA
........((((((((((((.((.((....)).)).)))))).(((((.(((.....(((.(....).)))..)))))----))).......)))))).......... ( -32.50)
>DroSec_CAF1 86402 104 - 1
ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCGCGUCAAGUUGGUUGCGGGAGGGGCAGUGGGG----GUUGGCGAUGGGUGGCAUAAGAGGCA
........((((((.(((((((((.((((.......)))).)))((.(.((..((.....))..)).).)).......----..))))).).)))))).......... ( -34.20)
>DroSim_CAF1 43825 107 - 1
ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCGCGUCAAGUUGGUUGCGGGAGGGGCAGUGGGG-GCAGUUGGCGAUGGGUGGCAUAAGAGGCA
........((((((.(((((((((((.(((......(((((.....)))))......(((.(....).)))..))).)-)))).))))).).)))))).......... ( -38.50)
>DroYak_CAF1 42619 108 - 1
ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCUCGUCAAGUUGGGUGUGGGCGGGGGAGGGGGAUGGGGAUGGGGAUGGGUGGCAUAAGAGGCA
........((((((.((.(((((.(..((.........((((..(((((......)))))...)))).........))..).))))).).).)))))).......... ( -36.57)
>consensus
ACAAAAUGGCCGCCGACGCCAUUGUUGUCAAAAAAAGGCGUCAAGCGCGUCAAGUUGGUUGCGGGAGGGGCAGUGGGG____GUUGGCGAUGGGUGGCAUAAGAGGCA
........((((((((((((.((.((....)).)).))))))..((.(.((..((.....))..)).).)).....................)))))).......... (-27.46 = -27.77 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:52 2006