Locus 4097

Sequence ID	2R_DroMel_CAF1
Location	13,490,369 – 13,490,462
Length	93
Max. P	0.657178

overview

Window 1

Location	13,490,369 – 13,490,462
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	89.14
Mean single sequence MFE	-9.92
Consensus MFE	-7.98
Energy contribution	-8.62
Covariance contribution	0.64
Combinations/Pair	1.06
Mean z-score	-1.51
Structure conservation index	0.80
SVM decision value	0.26
SVM RNA-class probability	0.657178
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13490369 93 + 20766785
CUUUCCAAACUUUGCAAUACUUAUAAACUUUAUCCACUGUCGCACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACUGUUUGUCAUUCUUAAA
.....(((((..(((.(((..................))).)))........(((((((((.....)))))))))..)))))........... ( -11.17)
>DroSec_CAF1 38961 83 + 1
CUUUCCAAACUUUGCAAUACUUAUAAACUUUAUCCACUGCCACACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACUGU----------UACA
....................................................(((((((((.....)))))))))....----------.... (  -7.50)
>DroSim_CAF1 39178 93 + 1
CUUUCCAAACUUUGCAAUACUUAUAAACUUUAUCCACUGCCACACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACUGUUUGUCACUCUUACA
.....(((((...(((.....((.......)).....)))............(((((((((.....)))))))))..)))))........... ( -10.70)
>DroEre_CAF1 39303 93 + 1
CUUUCCAAACUUUGCAAUACUUAUAAACUUUCUCCUCUGCCGCACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACCGCUUGCCAUUCUUAAA
.........................................(((........(((((((((.....))))))))).....))).......... (  -8.22)
>DroYak_CAF1 40850 93 + 1
CUUUCCAAACAUUGCAAUACUUUUCAACUUUAUGCUCUGCCACACUCUAAAUUUGUUUGCACGCUCUGCAAAUAACUGUUUGCCAUUCUUACA
.....((((((..(((................))).................(((((((((.....))))))))).))))))........... ( -11.99)
>consensus
CUUUCCAAACUUUGCAAUACUUAUAAACUUUAUCCACUGCCACACUCUAAAUUUGUUUGCACGUUCUGCAAAUAACUGUUUGCCAUUCUUACA
.....(((((...(((.....................)))............(((((((((.....)))))))))..)))))........... ( -7.98 =  -8.62 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:45 2006