Locus 4089

Sequence ID 2R_DroMel_CAF1
Location 13,463,934 – 13,464,046
Length 112
Max. P 0.666225
window6583

overview

Window 3

Location 13,463,934 – 13,464,046
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 87.54
Mean single sequence MFE -20.20
Consensus MFE -15.40
Energy contribution -14.84
Covariance contribution -0.56
Combinations/Pair 1.19
Mean z-score -1.67
Structure conservation index 0.76
SVM decision value 0.28
SVM RNA-class probability 0.666225
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13463934 112 - 20766785
CGAUUUAAAUAAUUUAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAACAAACCAGAGCUGCGUAGCUUUUCUGUGAUUAUACGAAUACAAUACCCGCAACCAUAACAAUA
................(((((.......(((((((.....)))))))..((....((((((....))))))....)).......)))))....................... ( -17.70)
>DroSec_CAF1 12710 112 - 1
CGAUUUAAAUAAUUUAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAACAAAGCCGAGCUGGGUGGCUUUUCUAUGAUUAUGCGAAUACAAUACCCGCAAUACUAACAAUA
...............(((.(((......(((((((.....)))))))...(((((((.......)))))))....))).)))(((...........)))............. ( -19.90)
>DroSim_CAF1 12892 112 - 1
CGAUUUAAAUAAUUUAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAACAAAGCCGAGCUGCGUGGCUUUUCUGUGAUUAUGCGAAUACAAUACCCGCAAUACUAACAAUA
...............(((.(((......(((((((.....)))))))...(((((((.......)))))))....))).)))(((...........)))............. ( -19.80)
>DroEre_CAF1 13066 108 - 1
UGAGUUAAAUAAUUCAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAA----GCAAAGCUGCGUAGCUUUUCUGUGAUUAUUGGAAUGCAAUACCCGCAAUACUCACAAUA
(((((..((((((.(((...........(((((((.....))))))).(----(.((((((....)))))).)))))))))))....(((.......)))..)))))..... ( -24.00)
>DroYak_CAF1 13531 108 - 1
CGACUUAAAUCAUUUAUAUUCAAAACAAUAAUGGCUUAAUGUCAUUAAG----CCAGAGCGGCGUAGCUUUUCUGUCAUUAUACGAAUGCAAUGGCCGUAUUACUAACAAUA
...............................(((((((((...))))))----)))..(((((((.((..(((.((......))))).)).)).)))))............. ( -19.60)
>consensus
CGAUUUAAAUAAUUUAUAUUCAAAACAAUAAUGGCUUAAUGCCAUUAAACAAAGCAGAGCUGCGUAGCUUUUCUGUGAUUAUACGAAUACAAUACCCGCAAUACUAACAAUA
................(((((.......(((((((.....))))))).........((((......))))..............)))))....................... (-15.40 = -14.84 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:28 2006