Locus 4088

Sequence ID 2R_DroMel_CAF1
Location 13,462,891 – 13,462,985
Length 94
Max. P 0.766436
window6582

overview

Window 2

Location 13,462,891 – 13,462,985
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.16
Mean single sequence MFE -34.78
Consensus MFE -19.60
Energy contribution -20.80
Covariance contribution 1.20
Combinations/Pair 1.17
Mean z-score -2.00
Structure conservation index 0.56
SVM decision value 0.52
SVM RNA-class probability 0.766436
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13462891 94 + 20766785
-UGACGGAUUCAGUCUCGGUUUUGGCCU-----GGCUCAAAUGCCCCAA-------------GUGUCU-------GGGCUAACAAAUGUUGGCAAAUCGCUGGGCAAACGGAGCCAAUCA
-.(((.......)))..(((....)))(-----(((((...(((((..(-------------(((...-------..((((((....))))))....)))))))))....)))))).... ( -35.30)
>DroSim_CAF1 11854 94 + 1
-UGACGGAUUCAGUCUCGGUUUUGGCCU-----GGCUCAAAUGCCCCAA-------------GUGUCU-------GGGCUAACAAAUGUUGGCAAAUCGCUGGGCAAACGGAGCCAAUCA
-.(((.......)))..(((....)))(-----(((((...(((((..(-------------(((...-------..((((((....))))))....)))))))))....)))))).... ( -35.30)
>DroEre_CAF1 12076 94 + 1
-UGACGGAUUCAGUCUCGGUUUUGGCCU-----GGCUCAAAUGCCCCAA-------------GUGUCU-------GGGCUAACAAAUGUUGGCAAAUCGCUGGGCAAACGGAGCCAAUCA
-.(((.......)))..(((....)))(-----(((((...(((((..(-------------(((...-------..((((((....))))))....)))))))))....)))))).... ( -35.30)
>DroYak_CAF1 12572 94 + 1
-UGACGGAUUCGGUCUCGGUUUUGGCCU-----GGCUCAAAUGCCCCAA-------------GUGUCU-------GGGCUAACAAAUGUUGGCAAAUCGCUGGGCAAACGGAGCCAAUCA
-.....((((.((((........)))).-----(((((...(((((..(-------------(((...-------..((((((....))))))....)))))))))....))))))))). ( -36.70)
>DroAna_CAF1 7038 120 + 1
CUCACGGAUUCAGUCUAGGUUCUGGCCCGGACCGGCUCGAAUGCCUGACUGUGUGUGCGUCCGUGUGUGGGCGGAGGGCUAACAAAUGUUGGCAAAUCGGUGUGCAAACGGAGCCAAUCA
..(((((..((((((..(((....)))..))).(((......)))))))))))((.((.(((((.((((.((.((..((((((....))))))...)).)).)))).))))))))).... ( -46.60)
>DroPer_CAF1 14039 81 + 1
-UGACGGAUUCAGUCUUGGUCUU---CU-----GCCUUCAGUGCUC------------------------------GUCCAACAAAUGAUGGCAAAUCUGUGUGGAAACGGAGCCAAUCU
-.(((.......)))((((.(((---(.-----.((..((((((.(------------------------------(((........)))))))...)))...))....))))))))... ( -19.50)
>consensus
_UGACGGAUUCAGUCUCGGUUUUGGCCU_____GGCUCAAAUGCCCCAA_____________GUGUCU_______GGGCUAACAAAUGUUGGCAAAUCGCUGGGCAAACGGAGCCAAUCA
..(((.......)))..(((((((.........(((......)))..................(((((.........((((((....))))))........)))))..)))))))..... (-19.60 = -20.80 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:27 2006