| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,460,901 – 13,461,007 |
| Length | 106 |
| Max. P | 0.541610 |
| Location | 13,460,901 – 13,461,007 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.57 |
| Mean single sequence MFE | -36.40 |
| Consensus MFE | -21.12 |
| Energy contribution | -21.15 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13460901 106 - 20766785 AUGGCCAUUGGUUCGAUAAGAAUGCGAUUUGCGUGAGCUGGCUG-GCGCUGGGAUUUCAAAAUUAAGCGCCAUAAAAUUGCAUUUUCGCAGGUCAACAUGCCGUACU (((((..(((..(.(...((((((((((((((....))....((-(((((..((((....)))).)))))))..))))))))))))..).)..)))...)))))... ( -36.90) >DroSec_CAF1 9699 107 - 1 AUGGCCGUUGGCUCGAUAAGAAUGCGAUUUGCGUGAGCUGGCUGGGCGCUGGGAUUUCAAAAUUAAGCGCCAUAAAAUUGCAUUUUCGCAGGUCAACAUGCCGCUUC ..(((.((((((..(...((((((((((((((....))......((((((..((((....)))).))))))...))))))))))))..)..))))))..)))..... ( -42.10) >DroSim_CAF1 9849 107 - 1 AUGGCCGUUGGCUCGAUAAGAAUGCGAUUUGCGUGAGCUGGCUGGGCGCUGGGAUUUCAAAAUUAAGCGCCAUAAAAUUGCAUUUUCGCAGGUCAACAUGCCGUUCC (((((.((((((..(...((((((((((((((....))......((((((..((((....)))).))))))...))))))))))))..)..))))))..)))))... ( -42.80) >DroEre_CAF1 10114 94 - 1 -----CGUUGGGUCGAUAAGAAUGCGAUUUGCGUGAGCUGGC-------AGGGAUUUCAAAAUUAAGCGCCAUAAAAUUGCAUU-UGGCAGGUCAGCGUGGCUUUUC -----((((((.(.(....(((((((((((((....))((((-------...((((....))))....))))..))))))))))-)..).).))))))......... ( -26.70) >DroYak_CAF1 10587 102 - 1 AUGGCCGUUGGGUCGAUAAGAAUGCGAUUUGCGUGAGCUGGC-----GCUGGGAUAUCAAAAUUAAGCGCCAUAAAAUUGCAUUUUCGCAGGUCAACAUGGCGUUUC ...(((((..(..(....((((((((((((((....))((((-----(((..(((......))).)))))))..))))))))))))....)..)...)))))..... ( -39.10) >DroAna_CAF1 5129 97 - 1 AUGCCUGCUGGGCCGAUAAGAAUGCGAUUUGCGUCGACUGG-----UGCAGGGAUUUCGAAAUUAAUCGCCAUAAAAUUGCAUUUUCGCUGGCCAGCCC-----AUC ......(((((.(((.(.((((((((((((((..(....).-----.)).((((((........)))).))...)))))))))))).).))))))))..-----... ( -30.80) >consensus AUGGCCGUUGGGUCGAUAAGAAUGCGAUUUGCGUGAGCUGGC____CGCUGGGAUUUCAAAAUUAAGCGCCAUAAAAUUGCAUUUUCGCAGGUCAACAUGCCGUUUC ......(((((.(.(...((((((((((((((....))((((..........(....)..........))))..))))))))))))..).).))))).......... (-21.12 = -21.15 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:19 2006