| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,460,101 – 13,460,194 |
| Length | 93 |
| Max. P | 0.776055 |
| Location | 13,460,101 – 13,460,194 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.97 |
| Mean single sequence MFE | -22.25 |
| Consensus MFE | -13.66 |
| Energy contribution | -12.96 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13460101 93 - 20766785 UAAUCACAAAGCGCUGCGUAAUCAAAUUUAUUGAAAAAUGAAGGCCGUAAAAAGUA---AAAUACAUGGCGGACGAAAAGCUGCCGGAAAGUC-----------CAG------------- ..........(((((.(((.......((((((....)))))).(((((........---......)))))..)))...))).)).((.....)-----------)..------------- ( -17.44) >DroPse_CAF1 3670 107 - 1 UAAUCACAAAGCGCCGCGUAAUCAAAUUUAUUGAAAAAUGAAAGCCAUAAAAAGUGGCGGAAUUCGUGGCAGCCGAAAAGUUGCAGGAAAA-------------CGGGAAAUCGGAAAAU ............((((((...((...((((((....)))))).(((((.....))))).))...))))))..((((...(((.......))-------------)......))))..... ( -27.10) >DroEre_CAF1 9330 93 - 1 UAAUCACAAAGCGCUGCGUAAUCAAAUUUAUUGAAAAAUGAAUGCCGUAAAAAGUA---AAAUACGCGGCGGACGAAAAGCUGCCGGAAAGUC-----------CGG------------- ...........(((((((((......((((((....))))))(((........)))---...)))))))))............((((.....)-----------)))------------- ( -24.20) >DroYak_CAF1 9773 93 - 1 UAAUCACAAAGCGCUGCGUAAUCAAAUUUAUUGAAAAAUGAAAGCCGUAAAAAGUA---AAAUACGCGGCGGACGAAAAGCUGCCGAAAAGUC-----------CGG------------- ............((((((((......((((((....)))))).((........)).---...))))))))((((................)))-----------)..------------- ( -20.79) >DroAna_CAF1 4306 104 - 1 UAAUCACAAAGCGCAGCGUAAUCAAAUUUAUUGAAAAAUGAAAGCCAUAAAAAGCG---AAAUACGUGGCAGCCGAAAAGUUACCGGAAAGGCGAGUGUAGGGUCGG------------- ............((.(((((......((((((....)))))).((........)).---...))))).))..((((.....(((((......)).))).....))))------------- ( -19.80) >DroPer_CAF1 11297 94 - 1 UAAUCACAAAGCGCCGCGUAAUCAAAUUUAUUGAAAAAUGAAAGCCAUAAAAAGUGGCGGAAUUCGUGGCAGCCGAAAAGUUGCAGGAAAA-------------CGG------------- ..........((((((((...((...((((((....)))))).(((((.....))))).))...))))))(((......))))).......-------------...------------- ( -24.20) >consensus UAAUCACAAAGCGCUGCGUAAUCAAAUUUAUUGAAAAAUGAAAGCCAUAAAAAGUA___AAAUACGUGGCAGACGAAAAGCUGCCGGAAAGUC___________CGG_____________ ...((....(((....((........((((((....)))))).(((((.................)))))...))....)))....))................................ (-13.66 = -12.96 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:18 2006