| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,456,140 – 13,456,233 |
| Length | 93 |
| Max. P | 0.603332 |
| Location | 13,456,140 – 13,456,233 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 89.04 |
| Mean single sequence MFE | -29.98 |
| Consensus MFE | -26.40 |
| Energy contribution | -26.82 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13456140 93 + 20766785 UGCGAAAGCCUGCGGUGUC-UGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCUUGACC-CCA--GUCAGA--------- ((((...(((((((((...-...)))..))))))..(((((..(......)..)))))..)))).....(((((.....))))).-...--......--------- ( -28.10) >DroSec_CAF1 4994 94 + 1 UGCGAAAGCCUGCGGUGUC-UGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCCUGACCCCCA--GCCAGA--------- ((((...(((((((((...-...)))..))))))..(((((..(......)..)))))..)))).....(((((.....))))).....--......--------- ( -30.60) >DroSim_CAF1 5167 93 + 1 UGCGAAAGCCUGCGGUGUC-UGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCUUGACC-CCA--CCCAGA--------- ((((...(((((((((...-...)))..))))))..(((((..(......)..)))))..)))).....(((((.....))))).-...--......--------- ( -28.10) >DroEre_CAF1 5523 93 + 1 UGCGAAAGCCUGCGGUGUC-UGUGCCAAGCAGGUGGGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCCUGACC-CCA--GCCCGU--------- ((((...(((((((((...-...)))..))))))..(((((..(......)..)))))..)))).....(((((.....))))).-...--......--------- ( -30.40) >DroYak_CAF1 5675 96 + 1 UGCGAAGGCCUGCGGUGUCCAGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCCUGACC-CCACAAUCGCA--------- .((((..(((((((((.......)))..))))))..(((((..(......)..)))))...........(((((.....))))).-......)))).--------- ( -30.70) >DroAna_CAF1 509 102 + 1 UGCGAAAGCCUGCGGUGUC-UGUGCCAAACAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAACAAGAGGUCUUGACC-UCA--GACUGCCCCCGGCUU .....(((((.(.((((((-((((((.....)))..(((((..(......)..)))))...))..........(((((....)))-)))--))).))).).))))) ( -32.00) >consensus UGCGAAAGCCUGCGGUGUC_UGUGCCAAGCAGGUGAGAAAUUGCUUAAUUGUGAUUUCAACGCAUAUCAGUCAGAGGUCCUGACC_CCA__GCCAGA_________ ((((...(((((((((.......)))..))))))..(((((..(......)..)))))..)))).....(((((.....)))))...................... (-26.40 = -26.82 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:17 2006