| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,455,197 – 13,455,406 |
| Length | 209 |
| Max. P | 0.952806 |
| Location | 13,455,197 – 13,455,296 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 95.45 |
| Mean single sequence MFE | -32.08 |
| Consensus MFE | -28.95 |
| Energy contribution | -29.07 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.952806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13455197 99 - 20766785 ACAAUAACGGUGCGCAUGGCGUGUAAUGAGCAUGUCCUUGAAAUACAAUAUGUCUGCAUAAAUUACCGUUAUGCGGUCGCGCAUUAGUGUUGGAGUGUC .(((((..(((((((..(((((((.....)))))))...............(.((((((((.......)))))))).))))))))..)))))....... ( -32.50) >DroSec_CAF1 4062 99 - 1 ACAAUAACGGUGCGCGUGGCGUGUAAUGAGCAUGUCCUUGAAAUACAAUAUGUCUGCAUAAAUUACCGUUAUGCGGUCGCGCAUUAGUGUUGGAGUGUC .(((((..((((((((.(((((((.....))))))))..............(.((((((((.......)))))))).))))))))..)))))....... ( -32.70) >DroSim_CAF1 4234 99 - 1 ACAAUAACGGUGCGCGUGGCGUGUAAUGAGCAUGUCCUUGAAAUACAAUAUGUCUGCAUAAAUUACCGUUAUGCGGUCGCGCAUUAGUGUUGGAGUGUC .(((((..((((((((.(((((((.....))))))))..............(.((((((((.......)))))))).))))))))..)))))....... ( -32.70) >DroEre_CAF1 4527 97 - 1 --AAUACUGGUGUGCGUGGCGCGUAAUGAGCAUGUCCUUGAAAUACAAUAUGUCUGCAUAAAUUACCGUUAUGCGGUUGCGCAUUAGUGUUGGUGUGUC --((((((((((((((.(.(((((((((..((......))........((((....))))......))))))))).)))))))))))))))........ ( -30.40) >consensus ACAAUAACGGUGCGCGUGGCGUGUAAUGAGCAUGUCCUUGAAAUACAAUAUGUCUGCAUAAAUUACCGUUAUGCGGUCGCGCAUUAGUGUUGGAGUGUC .(((((..(((((((..(((((((.....)))))))...............(.((((((((.......)))))))).))))))))..)))))....... (-28.95 = -29.07 + 0.12)
| Location | 13,455,296 – 13,455,406 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 91.36 |
| Mean single sequence MFE | -34.17 |
| Consensus MFE | -28.91 |
| Energy contribution | -31.22 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13455296 110 + 20766785 UCUUGUUCUUGUUGUUGACCAGGUUAGCUGGAGUUGGCCAAGAAGAACAAGAGCGGCAUUAGCAUUUCUAGGCACUGGACUUGUUGUUGCCAACGAUUUUCAUUACAUCG ((((((((((.((((..(((((.....))))..)..).))).))))))))))..((((.(((((..(((((...)))))..))))).))))..((((.........)))) ( -37.20) >DroSec_CAF1 4161 110 + 1 UCUUGUUCUUGUUGUUGACCAGGUAAGCUGGAGUUGGCCAAGAAGAACAAGAGCGGCAUUAGCAUUUCCAGGCACCGGACUUGUUGUUGCCAACGAUUUUCAUUACAUCG ((((((((((.((((..(((((.....))))..)..).))).))))))))))..((((.(((((..(((.(....))))..))))).))))..((((.........)))) ( -36.90) >DroSim_CAF1 4333 110 + 1 UCUUGUUCUUGUUGUUGACCAGGUAAGCUGGAGUUGGCCAAGAAGAACAAGAGCGGCAUUAGCAUUUCCAGGCACCGGACUUGUUGUUGCCAACGAUUUUCAUUACAUCG ((((((((((.((((..(((((.....))))..)..).))).))))))))))..((((.(((((..(((.(....))))..))))).))))..((((.........)))) ( -36.90) >DroEre_CAF1 4624 100 + 1 ----------GUUGUUGACCAGGUAAGCUGGAGUUGGCCAAGAAGAACAAGAGCGGCAUUAGCAUUUCCAGACAGCGGACUUGUUGUUGCCAGUGAUUUUCAUAACAUUG ----------(((((......(((.(((....))).)))..(((((.((.....((((.(((((..(((.......)))..))))).))))..)).)))))))))).... ( -25.70) >consensus UCUUGUUCUUGUUGUUGACCAGGUAAGCUGGAGUUGGCCAAGAAGAACAAGAGCGGCAUUAGCAUUUCCAGGCACCGGACUUGUUGUUGCCAACGAUUUUCAUUACAUCG ((((((((((.((((..(((((.....))))..)..).))).))))))))))..((((.(((((..(((.......)))..))))).))))................... (-28.91 = -31.22 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:16 2006