| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,451,195 – 13,451,285 |
| Length | 90 |
| Max. P | 0.893244 |
| Location | 13,451,195 – 13,451,285 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 80.27 |
| Mean single sequence MFE | -28.31 |
| Consensus MFE | -20.99 |
| Energy contribution | -22.00 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.893244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13451195 90 - 20766785 UCCAAAAAGAGGGCCAAAAGCUGCAAUUUA-AAUGGCCAAGCGGCCGUGCAAGGGGAGAUU----------CGGAGCAAGCUACAUCUUCAUAGGCCCGAA ..........(((((......((((.....-..(((((....)))))))))...((((((.----------...((....))..))))))...)))))... ( -27.91) >DroSec_CAF1 14812 100 - 1 UCCAAAAAGAGGGCCAAAAGCUGCAAUUUA-AAUGGCCAAGCGGCCGUGCAAGGGGAGAUUCCACUGUGCUCGGAGCCAGCUACAUCUUCAUAGGCCCAAA ..........(((((......((((.....-..(((((....)))))))))...((((((....(((.((.....)))))....))))))...)))))... ( -32.51) >DroAna_CAF1 15589 96 - 1 UCCACAAAGAGGGCCAAGAGCUGCAAUUUAAAAUGGCCAAG--GCACUGCAGAGGGAGAUAC-ACCAAG--UGGGAUAUGUUACAUCUUCAUAGGCCCAAA ..........(((((.....(((((..........((....--))..)))))..((((((((-(((...--..))...)))...))))))...)))))... ( -24.50) >consensus UCCAAAAAGAGGGCCAAAAGCUGCAAUUUA_AAUGGCCAAGCGGCCGUGCAAGGGGAGAUUC_AC___G__CGGAGCAAGCUACAUCUUCAUAGGCCCAAA ..........(((((......((((........(((((....)))))))))...((((((....(((....)))((....))..))))))...)))))... (-20.99 = -22.00 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:06 2006