Locus 407

Sequence ID 2R_DroMel_CAF1
Location 2,418,644 – 2,418,737
Length 93
Max. P 0.616794
window797

overview

Window 7

Location 2,418,644 – 2,418,737
Length 93
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 74.40
Mean single sequence MFE -29.97
Consensus MFE -14.12
Energy contribution -14.90
Covariance contribution 0.78
Combinations/Pair 1.14
Mean z-score -1.80
Structure conservation index 0.47
SVM decision value 0.17
SVM RNA-class probability 0.616794
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2418644 93 - 20766785
-CUG-------CGG----AGCC---------CUGUGCUUUGGAUGUUCUCCAGACAUCCAAUUAGUAGAUUUCUGCCUAAUUUGCGGCAUUACCUAUGGCAUUGCCGGCGAGUU
-..(-------(((----((..---------((((...(((((((((.....)))))))))...))))..))))))..(((((((((((...((...))...)))).))))))) ( -31.10)
>DroSec_CAF1 74914 94 - 1
CCUG-------CGG----UGCC---------CUGUGCUGUGGAUGUUCUCCAGACAUCCAAUUAGUAGAUUUCUGCCUAAUUUGCGGCAUUACCUUUGGCAUUGCCGGCAAGUU
((.(-------(((----((((---------..((((((((((((((.....)))))))(((((((((....))).)))))).))))))).......)))))))).))...... ( -35.80)
>DroSim_CAF1 32152 94 - 1
CCUG-------CGG----AGCC---------CUGUGCUGUGGAUGUUCUCCAGACAUCCAAUUAGUAGAUUUCUGCCUAAUUUGCGGCAUUACCUAUGGCAUUGCCGGCGAGUU
((.(-------(((----.(((---------..((((((((((((((.....)))))))(((((((((....))).)))))).))))))).......))).)))).))...... ( -31.20)
>DroEre_CAF1 30473 77 - 1
CCUG-------CGG----AGCC---------C-----------UGUUCUCCAGACAUCCAAUUAGUAGAUUUCUGCCUGAUUUGCGGG------CAUGGCAUUCCCGGCGAGCU
.(((-------(((----(...---------(-----------((.....)))...)))(((((((((....))).)))))).))))(------(.(((.....)))))..... ( -19.10)
>DroYak_CAF1 31169 92 - 1
CCUG-------CGGAGGGAGCC---------CUUUGCUGUGGAUGUUCUCCAGACAUCCAAUUAGUAGAUUUCUGCCUAAUUUGCGGG------CAUGGCACUGCCGGCGAGUU
...(-------((((((....)---------))))))..((((((((.....))))))))....((((....))))..(((((((.((------((......)))).))))))) ( -37.00)
>DroPer_CAF1 26502 109 - 1
CCUAGAGGUUGUGA----UGCUGUCUGAGAUUUUUGGACAGGCUAUUCUCCAGACAUCCAAUUAGUAGAUUUCCGCCUAAUUAAUGUGCUUACUUGCAGCAUUUCU-GCCAGUU
......(((...((----((((((..(.(((.((((((.((....)).)))))).))).((((((..(.....)..))))))..........)..))))))))...-))).... ( -25.60)
>consensus
CCUG_______CGG____AGCC_________CUGUGCUGUGGAUGUUCUCCAGACAUCCAAUUAGUAGAUUUCUGCCUAAUUUGCGGCAUUACCUAUGGCAUUGCCGGCGAGUU
...........(((.....(((..................(((((((.....)))))))(((((((((....))).))))))...............)))....)))....... (-14.12 = -14.90 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:49 2006