Locus 4064

Sequence ID 2R_DroMel_CAF1
Location 13,415,030 – 13,415,137
Length 107
Max. P 0.835759
window6546

overview

Window 6

Location 13,415,030 – 13,415,137
Length 107
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 85.90
Mean single sequence MFE -18.61
Consensus MFE -13.73
Energy contribution -13.73
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.74
SVM decision value 0.73
SVM RNA-class probability 0.835759
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13415030 107 + 20766785
AAAAGGCAAUGAACAAAUUUAGCACUUUAAAUAUUGACACUUGUUACAUAAACUUCCACUUAGCGCAGUUAUUAC----AGUCACUAAUUGGAGUGCAAACAAUUAAAUUC
.....................(((((((((.((.((((....((((..............))))...((....))----.)))).)).))))))))).............. ( -16.04)
>DroSec_CAF1 12427 94 + 1
-------------CAAAUUUAGCACUUUAAAUAUUGACACUUGAUACAUAAACUUGCACUUACCGCAGUUAUUAC----AGUCACUAAUUGGAGUGCAAACAAUUAAAUUC
-------------........(((((((((.((.((((...(((((.....(((.((.......)))))))))).----.)))).)).))))))))).............. ( -18.30)
>DroSim_CAF1 13619 94 + 1
-------------CAAAUUUAGCACUUUAAAUAUUGACACUUGAUACAUAAACUUGCACUUAGCGCAGUUAUUAC----AGUCACUAAUUGGAGUGCAAACAAUUAAAUUC
-------------........(((((((((.((.((((...(((((.....((((((.....))).)))))))).----.)))).)).))))))))).............. ( -19.20)
>DroEre_CAF1 12719 111 + 1
AAAAGGCAUUCAACAAAUUUAGCACUUUAAAUAUUGACAUUUGAUACAUAAACUUCCACUCAGUGCAGUUAUUACUAAUAGUCACUAAUUGGAGUGCAAACAAUUAAAUUC
.....................(((((((((.((.((((((((((((.....(((.......))).....)))))..))).)))).)).))))))))).............. ( -16.90)
>DroYak_CAF1 12780 111 + 1
AAAAGGCAUUUACCAAAUUUGGCACUUUAAAUAUUGACACUUGAUGCAUAAACUGCCACUUAGUGCAGUUAUUACUAAUAGUCACUAAUUGGAGUGCAAACAAUUAUAUUC
.....(((((..((((...(((((.((((..(((..(...)..)))..)))).))))).(((((((.((((....)))).).))))))))))))))).............. ( -22.60)
>consensus
AAAAGGCA_U_A_CAAAUUUAGCACUUUAAAUAUUGACACUUGAUACAUAAACUUCCACUUAGCGCAGUUAUUAC____AGUCACUAAUUGGAGUGCAAACAAUUAAAUUC
.....................(((((((((.((.((((............((((............))))..........)))).)).))))))))).............. (-13.73 = -13.73 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:53 2006