Locus 4057

Sequence ID 2R_DroMel_CAF1
Location 13,387,318 – 13,387,423
Length 105
Max. P 0.873689
window6536

overview

Window 6

Location 13,387,318 – 13,387,423
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.45
Mean single sequence MFE -28.00
Consensus MFE -18.64
Energy contribution -19.87
Covariance contribution 1.23
Combinations/Pair 1.27
Mean z-score -1.64
Structure conservation index 0.67
SVM decision value 0.88
SVM RNA-class probability 0.873689
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13387318 105 - 20766785
UUAACGCUUUACUUCCUCGAAAGGCGUUCGUUGACUUCGCAGCGUAAAAUAAG-----CAAGCUUAUGCUGCUUUGUUC---------UGUUAU-UUUUCGCGCUUUUCGCAGGGCUAAU
.............((((((((((((((....((((...((((.(((..(((((-----....)))))..))).))))..---------.)))).-.....)))))))))).))))..... ( -29.80)
>DroSec_CAF1 5040 106 - 1
UUAACGCUUUACUUCCUCGAAAGGCGUUCGUUGACUUUGCAGCGUAAAAUUAG-----CAAGCUUAUGCUGCUUUGUUC---------UGUUUUUUUUUCGCGCUUUUCGCAGGGCUAAU
.............((((((((((((((.....(((...(((((((((......-----.....)))))))))...))).---------............)))))))))).))))..... ( -28.57)
>DroSim_CAF1 5092 105 - 1
UUAACGCUUUACUUCCUCGAAAGGCGUUCGUUGACUUCGCAGCGUAAAAUAAG-----CAAGCUUAUGCUGCUUUGUUC---------UGUUAU-UUUUCGCGCUUUUCGCAGGGCUAAU
.............((((((((((((((....((((...((((.(((..(((((-----....)))))..))).))))..---------.)))).-.....)))))))))).))))..... ( -29.80)
>DroEre_CAF1 5098 105 - 1
UUAACGCUUUACUUCCUCGAAUGGCGUAUGUUGACUUCGCAGCGUAAAAUAAG-----CAAGCUUAUGCUGCUUUGUUU---------UGUAUU-UUUUUGCGCUUCUCGCAGAGCUAAU
.....(((((.......(((..(((((((((((......)))))(((((((((-----((.((....))))).))))))---------))....-....))))))..))).))))).... ( -25.10)
>DroYak_CAF1 4972 105 - 1
UUAACGCUUUACUUCCUCGACAGGCGUUCGUUGACUUCGCGGCGUAAAAUAAG-----CAAGCUUAUGCUGCUUUGUUC---------UGUUAU-UUUUCGCGCUUUUCGCAGGGCUAAU
.............(((((((.((((((....((((...((((.(((..(((((-----....)))))..))).))))..---------.)))).-.....)))))).))).))))..... ( -25.50)
>DroAna_CAF1 5416 106 - 1
---------GACUUCCUUUUGCGGCGUUUGUUGACUUCUAGCCGUCUAAUAAUGGCCCCAAAGGCGAGGUGCAAUGUUUACCGGAUCCUGCAAC-CU----GGACAUUUGCAUGGCCAAU
---------.(((((((((((.(((..((((((((........))).)))))..))).)))))).)))))(((((((...((((..........-))----))))).))))......... ( -29.20)
>consensus
UUAACGCUUUACUUCCUCGAAAGGCGUUCGUUGACUUCGCAGCGUAAAAUAAG_____CAAGCUUAUGCUGCUUUGUUC_________UGUUAU_UUUUCGCGCUUUUCGCAGGGCUAAU
.............((((((((((((((.....(((...(((((((((................)))))))))...)))......................)))))))))).))))..... (-18.64 = -19.87 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:42 2006