| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,373,033 – 13,373,128 |
| Length | 95 |
| Max. P | 0.583599 |
| Location | 13,373,033 – 13,373,128 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 81.49 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -15.05 |
| Energy contribution | -15.05 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583599 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13373033 95 + 20766785 GUUCUAUGUU---UUUUUUUUUAACAUUAAGCCAACUCAAUGUGCAGGGCCAGAAAUGAUGGCAAAAACCACAUAAUCUUUUUAUUUGGACAUCGCAU (((..(((((---.........)))))..))).........((((...((((.......)))).....(((.((((.....)))).))).....)))) ( -16.90) >DroSec_CAF1 71831 94 + 1 GUUCUGUUU----UUUUUUUUAAACAUUAAGCCAACUCAAUGUGCAGGGCCGGAAAUGCUGGCAGAAACCACAUAAUCUUUUUAUUUGGACCUUGCAU ....(((((----........)))))...............((((((((((((.....))))).....(((.((((.....)))).)))..))))))) ( -21.60) >DroSim_CAF1 75133 98 + 1 GUUCUAUGUUUUGUUUUUUUUUAACAUUAAGCCAACUCAAUGUGCAGGGCCGGAAAUGCUGGCAGAAACCACAUAAUCUUUUUAUUUGGACCUCGCAU (((..(((((..(......)..)))))..))).......(((((.((((((((.....))))).....(((.((((.....)))).))).)))))))) ( -23.10) >DroEre_CAF1 73113 75 + 1 GUUU-------------UA----------AGCCAACUUAAUGUGCAGGGCCAGAAAUGCUGGCAGAAACCACAUAAUCUUUUUAUUUGGAAAUGGCAU ....-------------..----------.((((.....(((((....(((((.....)))))......)))))..(((........)))..)))).. ( -19.20) >consensus GUUCUAUGU____UUUUUUUUUAACAUUAAGCCAACUCAAUGUGCAGGGCCAGAAAUGCUGGCAGAAACCACAUAAUCUUUUUAUUUGGACAUCGCAU .........................................((((...(((((.....))))).....(((.((((.....)))).))).....)))) (-15.05 = -15.05 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:35 2006