| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,372,568 – 13,372,673 |
| Length | 105 |
| Max. P | 0.852012 |
| Location | 13,372,568 – 13,372,673 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.60 |
| Mean single sequence MFE | -42.35 |
| Consensus MFE | -29.83 |
| Energy contribution | -30.00 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13372568 105 - 20766785 ---AGUU----UAAACUCACCAUGGCGAAUCCGGAGAGCAGGGCGGACGUCUUGCUGGAUGCCUUUAGCUUGGCCCGACUAAGCUGGAGCUUCCGCCAGGACAGGUAGGUGG ---....----......((((.((.(...(((((..((((((((....))))))))(((.((.((((((((((.....)))))))))))).))).)).)))..).)))))). ( -40.90) >DroVir_CAF1 82399 111 - 1 -AACAAAUGAACUAACUUACCAUGGCGAAGCCAGAUAACAGGGCGGACGUCUUGCUGGAGGCCUUCAGCUUGGCUCGGCUGAGCUGUAGCUUACGCCAGGAGAGGUAGGUGG -.............(((((((.(((((...((((....((((((....))))))))))((((...(((((..((...))..)))))..)))).))))).....))))))).. ( -43.20) >DroPse_CAF1 71205 111 - 1 -AUAAAUAUUAUUGACUUACCAUGGCGAAGCCGGAGAGUAGGGCCGAUGUCUUGCUGGAGGCCUUCAAUUUGGCGCGGCUCAGCUGGAGCUUGCGCCAGGAGAGGUAGGUGG -.............(((((((.....((((((....((((((((....))))))))...)).))))..(((((((((((((.....)))).)))))))))...))))))).. ( -44.80) >DroGri_CAF1 79608 111 - 1 -AUUGAUUUGGAUUACUCACCAUAGCGAAACCCGAUAAAAGAGCGGAUGUUUUGCUGGAGGCCUUCAGUUUGGCGCGACUCAGCUGAAGUUUGCGCCAGGAGAGAUAAGUGG -(((((...((....(((....((((((((((((.........)))..)))))))))))).)).)))))((((((((((((....).)).)))))))))............. ( -31.40) >DroYak_CAF1 73726 112 - 1 AUGAUUUUGGGUACACUCACCAUGGCGAAUCCGGAGAGCAGGGCGGACGUCUUGCUGGAGGCCUUGAGCUUGGCCCGGCUGAGCUGGAGCUUCCGCCAGGAGAGGUAGGUGG ...........(((.(((.((.((((..........((((((((....))))))))((((((.((.((((..((...))..)))).)))))))))))))).))))))..... ( -49.00) >DroPer_CAF1 71489 111 - 1 -AUAAAUAUUAUUGACUUACCAUGGCGAAGCCGGAGAGUAGGGCCGAUGUCUUGCUGGAGGCCUUCAAUUUGGCGCGGCUCAGCUGGAGCUUGCGCCAGGAGAGGUAGGUGG -.............(((((((.....((((((....((((((((....))))))))...)).))))..(((((((((((((.....)))).)))))))))...))))))).. ( -44.80) >consensus _AUAAAUUUGAUUAACUCACCAUGGCGAAGCCGGAGAGCAGGGCGGACGUCUUGCUGGAGGCCUUCAGCUUGGCGCGGCUCAGCUGGAGCUUGCGCCAGGAGAGGUAGGUGG ...............(((.((.(((((...((((....((((((....))))))))))((((.(((((((..(.....)..))))))))))).))))))).)))........ (-29.83 = -30.00 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:34 2006