| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,370,827 – 13,370,930 |
| Length | 103 |
| Max. P | 0.528336 |
| Location | 13,370,827 – 13,370,930 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.57 |
| Mean single sequence MFE | -22.34 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.53 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13370827 103 + 20766785 UACAGUGAAUCGUCGUUACUGGCAUUCGGAAA-UCCGCAAGAUAU--------CAAUGCAAAUACAUAUGUCGAUGUGAUUCACUGACAGAAGUUAGCAUAAAAGAAAACAU-------- ..((((((((((.((((...(((((..((...-.))(((......--------...)))........)))))))))))))))))))......(((..(......)..)))..-------- ( -23.40) >DroSec_CAF1 69629 107 + 1 UACAGUGAAUCGUCGUUACUGGCAUUCGGAAGCUUCGCGAGAUAU--------CUAUGCAAAU----AUGUCGAUGUGAUUCACUGAAAGAAGUCAGCAUAAAA-AAUAUAUACAUAUUU ..((((((((((.((((((..((((..(((....((....))..)--------))))))....----..)).))))))))))))))..................-............... ( -23.10) >DroSim_CAF1 72570 99 + 1 UACAGUGAAUCGUCGUUACUGGCAUUCGAAAGCUUCGCGAGAUAU--------CUAUGCAAAU----AUGUCGCUGUGAUUCACUGAAAGAAGUCAGCAUAAAU-AAAGUAU-------- ..(((((((((((((....)))).............((((.((((--------........))----)).))))...)))))))))..................-.......-------- ( -24.30) >DroEre_CAF1 70760 101 + 1 UACAGUGAAUCGUCGUUACUGGAAUUCAGCAA-CACGCGGGAUAA--------CUAUGCAAAA----AUGUUGAUGUGAUUCACUUAACAAAA-AAGCAUACAU-AAAAUAUAUAU---- ..((((((.......))))))..((((.((..-...)).))))..--------.(((((....----.((((((.(((...)))))))))...-..)))))...-...........---- ( -17.40) >DroYak_CAF1 71882 112 + 1 UACAGUGAAUCGUCGUUGCUGGAAUUCAGCAA-GUCGCGAGAUAUAUGUACAUAUAUGCAAAA----AUGUUGAUGUGAUUCACUAAAUGAAACCAGCAUAAAA-AUUAUAUAUAUGU-- ...((((((((....((((((.....))))))-(((....)))......((((....(((...----.)))..))))))))))))...........(((((...-........)))))-- ( -23.50) >consensus UACAGUGAAUCGUCGUUACUGGCAUUCGGAAA_UUCGCGAGAUAU________CUAUGCAAAU____AUGUCGAUGUGAUUCACUGAAAGAAGUCAGCAUAAAA_AAAAUAUA_AU____ ..((((((((((.((((.(((.....))).......(((.................))).............)))))))))))))).................................. (-14.13 = -14.53 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:33 2006