Locus 405

Sequence ID 2R_DroMel_CAF1
Location 2,412,135 – 2,412,228
Length 93
Max. P 0.596087
window795

overview

Window 5

Location 2,412,135 – 2,412,228
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 82.08
Mean single sequence MFE -23.67
Consensus MFE -16.71
Energy contribution -17.27
Covariance contribution 0.56
Combinations/Pair 1.42
Mean z-score -1.51
Structure conservation index 0.71
SVM decision value 0.13
SVM RNA-class probability 0.596087
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2412135 93 - 20766785
AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGAGUCUGAUGCAAAUGGGAGAGCCUGAGCCAAAGCCAUGUGGCUGGUGACUAG
.......(((((((..............)))))))......((((..........(((....)))..((((..(((....))))))))))).. ( -24.74)
>DroSec_CAF1 68519 93 - 1
AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGAGUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCAUGUGGCUGGUGACUUG
.......(((((((..............)))))))....((((((..........(((....)))..((((..(((....))))))))))))) ( -28.44)
>DroSim_CAF1 25627 93 - 1
AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGAGUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCAUGUGGCUGGUGACUUG
.......(((((((..............)))))))....((((((..........(((....)))..((((..(((....))))))))))))) ( -28.44)
>DroEre_CAF1 24583 93 - 1
AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGGAUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCAUGUGGUUGGUGACGCG
.......(((((((..............)))))))..(((.((((..(((......(((........))).....)))..)))).)))..... ( -25.44)
>DroYak_CAF1 24906 93 - 1
AAACUUAGCUGCAGAAACCACAAAUUAACUGCAGUAACACGAAUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCACGAGACUAGAGACGUG
.......(((((((..............)))))))..((((..((((.........(((..((....))....))).......))))..)))) ( -20.83)
>DroAna_CAF1 17458 85 - 1
---CUUAA---AAAAAAGAAGACUUUAAUUGCAACAACA-GAGCUUGAUGCAAAACUUAAACUUUGAAACGCGGCCAUGUGGCUCGUCA-GCG
---.....---.........(((.....(((((.(((..-....))).)))))...................((((....)))).))).-... ( -14.10)
>consensus
AAACUUAGCUGCAGAAACAACAAAUUAACUGCAGCAACACGAGUCUGAUGCAAAUGGGCGAGCCUGAGCCAAAGCCAUGUGGCUGGUGACGUG
.......(((((((..............)))))))..(((.((((....((.....(((........)))...)).....)))).)))..... (-16.71 = -17.27 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:47 2006