Locus 4039

Sequence ID 2R_DroMel_CAF1
Location 13,334,001 – 13,334,094
Length 93
Max. P 0.660401
window6508

overview

Window 8

Location 13,334,001 – 13,334,094
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 91.53
Mean single sequence MFE -18.65
Consensus MFE -17.10
Energy contribution -17.22
Covariance contribution 0.11
Combinations/Pair 1.12
Mean z-score -1.17
Structure conservation index 0.92
SVM decision value 0.27
SVM RNA-class probability 0.660401
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13334001 93 + 20766785
GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCAGCUGA-AAAUCGGGCAUAUCUGAU
.......(((((..(((((..--------..)))))........(((((.........(((.....)))..........(((.-....))))))))))))). ( -17.40)
>DroSec_CAF1 33507 93 + 1
GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCUGCCGA-AAAUCGGGCAUAUCUGAU
.......(((((..(((((..--------..)))))........(((((.........(((.....)))..........(((.-....))))))))))))). ( -19.60)
>DroSim_CAF1 35340 93 + 1
GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCUGCUGA-AAAUCGGGCAUAUCUGAU
.......(((((...((((((--------.(((.......))).))))))........(((.....))).....(((((.(..-..).)))))...))))). ( -19.90)
>DroEre_CAF1 34214 93 + 1
GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCCGCUGA-AAAUCGGGCAUAUCUGAU
.......(((((...((((((--------.(((.......))).))))))........(((.....))).....(((((.(..-..).)))))...))))). ( -22.10)
>DroYak_CAF1 34872 93 + 1
GUAACGCUCGGAAUUUGCAUA--------UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCUGCUGA-AAAUCGGGCAUAUCUGAU
.......(((((...((((((--------.(((.......))).))))))........(((.....))).....(((((.(..-..).)))))...))))). ( -19.90)
>DroAna_CAF1 33421 102 + 1
GUAAAGCUUGGAAUUUGCAUACGUUUGGAUUUGCAAUCAAUAACCACGAACAAAUUAAGACAAAUUGUCGAAGAGCUGGCUAAAAAAUUGGACAUAUCUGAU
....(((((..((((((....(((..((..(((....)))...)))))..))))))..(((.....)))...))))).........((..((....))..)) ( -13.00)
>consensus
GUAACGCUCGGAAUUUGCAUA________UAUGCAAUCAAUAUCUAUGCACAAAUUAAGACAAAUUGUCGAAAAGCCUGCUGA_AAAUCGGGCAUAUCUGAU
.......(((((..(((((((........)))))))........(((((.........(((.....)))..........((((....)))))))))))))). (-17.10 = -17.22 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:12 2006