Locus 4036

Sequence ID 2R_DroMel_CAF1
Location 13,326,219 – 13,326,309
Length 90
Max. P 0.773560
window6505

overview

Window 5

Location 13,326,219 – 13,326,309
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.34
Mean single sequence MFE -25.72
Consensus MFE -16.52
Energy contribution -16.80
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.69
Structure conservation index 0.64
SVM decision value 0.54
SVM RNA-class probability 0.773560
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13326219 90 - 20766785
GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCACAUGCAACAUGCACGCCGG--CCAAACGAACC--AGCGAUGUUGC------
(((((((((((....))))..............)))))))............(((((((...(((.((--.........))--.))))))))))------ ( -26.13)
>DroPse_CAF1 23662 74 - 1
GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCGCAUGCAACAUGCAA--CGG------ACGACUC--U----------------
(((((((((((....))))..............))))))).((((((.(((((...)))))..--)))------.)))...--.---------------- ( -23.43)
>DroEre_CAF1 26519 90 - 1
GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCACAUGCAACAUGCACGCCGG--CCAAACGAACC--AGCCAUGUUGU------
(((((((((((....))))..............)))))))............((((((((...((.((--.........))--.))))))))))------ ( -25.13)
>DroWil_CAF1 32911 90 - 1
AGCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCACAUGCAACAUGCACGCUGA--CCGUAGCAACU--GAUGCUGUUGC------
.((....((((....)))).................((......))))....((((((.((((((((.--...))))....--).)))))))))------ ( -21.50)
>DroAna_CAF1 25776 100 - 1
GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCGCAUGCAACAUGCACGCUGGACCCAAACGUACCACAGCGAUGUUGCAGCAGC
(((((((((((....))))..............)))))))......((((.((((((((...(((((.((......))....))))))))))))))).)) ( -34.73)
>DroPer_CAF1 23794 74 - 1
GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCGCAUGCAACAUGCAA--CGG------ACGACUC--U----------------
(((((((((((....))))..............))))))).((((((.(((((...)))))..--)))------.)))...--.---------------- ( -23.43)
>consensus
GUCCAUAUGCGGAAACGCAAUUUUGUCGUUAUUUAUGGACCUUGCCGCACAUGCAACAUGCACGCCGG__CCAAACGAACC__AGCGAUGUUGC______
(((((((((((....))))..............)))))))....(((....(((.....)))...)))................................ (-16.52 = -16.80 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:09 2006