Locus 4033

Sequence ID 2R_DroMel_CAF1
Location 13,315,665 – 13,315,765
Length 100
Max. P 0.625604
window6501

overview

Window 1

Location 13,315,665 – 13,315,765
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 85.17
Mean single sequence MFE -23.15
Consensus MFE -17.23
Energy contribution -17.35
Covariance contribution 0.12
Combinations/Pair 1.31
Mean z-score -1.57
Structure conservation index 0.74
SVM decision value 0.19
SVM RNA-class probability 0.625604
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13315665 100 + 20766785
CAUUUUACAUAAAUAUUUUACAUUGCGUAGAAUGUCUAGUGCUUCAGUGAAAACUAGCGCCCGCUGCUUUACGUUCUUAACCACAGUUCCACGCGUGCGC
.....(((.((.(((((((((.....))))))))).)))))....(((....))).((((.(((((....((.............))..)).))).)))) ( -18.82)
>DroSim_CAF1 16271 100 + 1
CAUUUUACAUAGAUAUUUUACAUUGCGUAGAAUGUCAAGUGCUUCAGUGUAAACUGGUGCCCACUGCUUUACGUUCUUAACCACAGUUCCACGCGUGCAC
...........((((((((((.....))))))))))..((((....((((.(((((.........((.....)).........)))))..))))..)))) ( -23.17)
>DroEre_CAF1 15418 100 + 1
AUUUUUACAUAGACAUUUGACAUUACGUAGAAUGUCAAGUAUAUCGAUGUAAACUAGUGCUCGCUGCUUUACGUUCUUAACCGCAGUACCACGCGUGCGC
...(((((((.((.((((((((((......))))))))))...)).)))))))...((((.(((((...(((((........)).))).)).))).)))) ( -24.50)
>DroYak_CAF1 15560 100 + 1
AAUUAUACAAAUACAUUCUACAUUACGUAGAAUGUCAAGUGUAUCGCUGUAAACUAGUGCUCACUGCUUUACGUUCUCAACCGCAGCACCACGCGUGCGC
....(((((...(((((((((.....)))))))))....)))))....(((((.((((....)))).))))).........((((((.....)).)))). ( -26.10)
>consensus
AAUUUUACAUAGACAUUUUACAUUACGUAGAAUGUCAAGUGCAUCAGUGUAAACUAGUGCCCACUGCUUUACGUUCUUAACCACAGUACCACGCGUGCGC
...........((((((((((.....))))))))))..(((....((((((((.((((....)))).))))))))......))).((((.....)))).. (-17.23 = -17.35 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:05 2006