| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,314,735 – 13,314,829 |
| Length | 94 |
| Max. P | 0.543591 |
| Location | 13,314,735 – 13,314,829 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 84.79 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -15.83 |
| Energy contribution | -15.17 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13314735 94 - 20766785 UUAUGCGGGGGUAUUCCAAAAAUAUCUCUAUAUUAAA-GA---AAAACUCAUUUGGUGUCCUUAUGCUGAGCACCUUAAGAUUUGAGAAUAAGAAAAG-------- ..(((..((((((((.....))))))))..)))....-..---....((((...((((..(.......)..))))........))))...........-------- ( -16.70) >DroSec_CAF1 14267 105 - 1 UUAUGCGGGGAUAUUGCAAAAAUAUUUCUAUAUUAAA-AAAACAAAACUUAUUUGGUGUCCUUAUGCUGAGCACCUUAAGAUUUGAGAAUAAUAAUAGAAGCUAAU ....((((..(((((.....)))))..))........-....((((.((((...((((..(.......)..)))).)))).))))...............)).... ( -20.60) >DroSim_CAF1 15332 95 - 1 UUAUGAGGGGAUAUUGCAAAAAUAUUUCUAUAUAAAAAAAAACAAAACUCAUUUGGUGUCCUUAUGCUGAGCACCUUAAGAUUUGAGAAUAAGAA----------- (((((.((..(((((.....)))))..)).)))))............((((...((((..(.......)..))))........))))........----------- ( -18.20) >consensus UUAUGCGGGGAUAUUGCAAAAAUAUUUCUAUAUUAAA_AAAACAAAACUCAUUUGGUGUCCUUAUGCUGAGCACCUUAAGAUUUGAGAAUAAGAA_AG________ ......(((((((((.....)))))))))..................((((...((((..(.......)..))))........))))................... (-15.83 = -15.17 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:04 2006