| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,289,618 – 13,289,709 |
| Length | 91 |
| Max. P | 0.719380 |
| Location | 13,289,618 – 13,289,709 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 85.32 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -16.23 |
| Energy contribution | -16.15 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13289618 91 - 20766785 CUCAACUCUGACAGCUGCAGCGGGUGGCC-AAAAUCGGAAUCAAAACAACAUAACACCAUUUCAUAUUCAAAUCAACUGCAGCUGGCAACUU ........((.(((((((((..((((.((-......))................))))((((.......))))...))))))))).)).... ( -19.63) >DroSec_CAF1 17141 91 - 1 CUCAACUCUGACAGUUGCAGCGGGUGGCA-AAAAUCGGAAUCAAAACACCAUUACACCAUUUCAUAUUCAAAUCAACUGCAGCUGGCAAGUU ...((((.((.(((((((((..((((...-................))))........((((.......))))...))))))))).)))))) ( -18.61) >DroSim_CAF1 17143 91 - 1 CUCAACUCUGACAGCUGCAGCGGGUGGCA-AAAAUCGGAAUCAAAACACCAUUACACCAUUUCAUAUUCAAAUCAACUGCAGCUGGCAAGUU ...((((.((.(((((((((..((((...-................))))........((((.......))))...))))))))).)))))) ( -21.01) >DroEre_CAF1 17180 72 - 1 CUCAACUCUGACAUCUGCAGCGGGUGGCC-AAAAUCGGAAUCAAAACACC--------AUUU-----------CAACUGCAGCUGGCAACUU ........((.((.((((((..((((.((-......))........))))--------....-----------...)))))).)).)).... ( -14.90) >DroYak_CAF1 17192 83 - 1 CUCAACUCUGACAGCUGCAGCGGGUGGCC-AAAAUCGGAAUCAAAACACC--------AUUUCAUAUUCAAAUCAACUGCAGCUGGCAACUU ........((.(((((((((..((((.((-......))........))))--------((((.......))))...))))))))).)).... ( -20.30) >DroAna_CAF1 16539 90 - 1 CUCAACUCUGACAGCUGCAGCGGGUGGCCCGAAAUCGAAAUCAAAA--UCAUAACAGCGUUUCAUAUUCAAGUCAACUGCAGCUGCCAACUU ........((.(((((((((((((...)))).....(((((.....--..........))))).............))))))))).)).... ( -23.16) >consensus CUCAACUCUGACAGCUGCAGCGGGUGGCC_AAAAUCGGAAUCAAAACACCAU_ACACCAUUUCAUAUUCAAAUCAACUGCAGCUGGCAACUU ........((.(((((((((..(((........)))(((((.................))))).............))))))))).)).... (-16.23 = -16.15 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:54 2006