| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,271,514 – 13,271,627 |
| Length | 113 |
| Max. P | 0.999990 |
| Location | 13,271,514 – 13,271,627 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 69.66 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -14.38 |
| Energy contribution | -13.17 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.74 |
| SVM decision value | 5.58 |
| SVM RNA-class probability | 0.999990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13271514 113 - 20766785 GAAAAGCAAGAGUUUAAUAAAUCUAUUUAUAUGAAUGGAUUAAUUGAAACCACAACAUAUUAGCAAGAA--GCAUCUGUUAAACCGCAUCUUUAUUGAAACUAAAAAUUUGCUCA ....((((((..((((((.(((((((((....))))))))).))))))..)........((((((.((.--...))))))))..........................))))).. ( -18.20) >DroSec_CAF1 3079 93 - 1 -------AAUAGUGUAAGAAAUCCAUUUAUAAUAAUGGAUUA---------------CAUUAGCAAAUAAAUAGGUUGGGAAACCGCAUCUCUAUUUAAUCUAAUCAUUUACUGA -------..(((((...(.((((((((......)))))))).---------------)(((((....((((((((.(((....)))....))))))))..)))))....))))). ( -21.10) >DroSim_CAF1 3085 92 - 1 -------AAUAGUGUAAGAAAUCCAUUUAUAUUAAUGGAUUA---------------UA-UAGCAAAUAAAUUGGUUGGGAAACCGCAUCUCUAUUUAAUCUAAUCAUUUACUAA -------..(((((...((((((((((......)))))))).---------------..-.......(((((.((((((....))).)))...)))))......))...))))). ( -19.00) >consensus _______AAUAGUGUAAGAAAUCCAUUUAUAUUAAUGGAUUA_______________UAUUAGCAAAUAAAUAGGUUGGGAAACCGCAUCUCUAUUUAAUCUAAUCAUUUACUAA .........(((((.....((((((((......)))))))).....................((.(((......)))((....))))......................))))). (-14.38 = -13.17 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:45 2006