Locus 4016

Sequence ID 2R_DroMel_CAF1
Location 13,265,973 – 13,266,064
Length 91
Max. P 0.813413
window6479

overview

Window 9

Location 13,265,973 – 13,266,064
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.21
Mean single sequence MFE -23.68
Consensus MFE -16.11
Energy contribution -16.83
Covariance contribution 0.72
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.68
SVM decision value 0.66
SVM RNA-class probability 0.813413
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13265973 91 + 20766785
AAU--UU-CACAACA---UCCAC-UAGCCACAACCGCCAUCAUGGCUCUAAUGGUCAACCAGUAUGCCACUAUCAGUCCGGAUUAUGCGGUUCUGGUG
...--..-.......---.....-..((((.((((((.....((((.....(((....)))....))))..(((......)))...)))))).)))). ( -23.40)
>DroVir_CAF1 2653 91 + 1
AAU--UGGCUUCGCGUAC----A-CAGCCACAACUGCGAUCAUGGCGCUGAUGGUCAACCAAUAUGCGACCAUUAGUCCGGAUUAUGCGGUGCUCGUC
...--.(((.((((((((----.-(((......))).)(((.(((.((((((((((...........))))))))))))))))))))))).))).... ( -30.20)
>DroSim_CAF1 338 92 + 1
AAU--UU-CACAACA---UCUAUUUAGCCACAACCGCCAUCAUGGCUCUAAUGGUCAACCAGUAUGCCACUAUCAGUCCGGAUUACGCGGUCCUGGUG
...--..-.......---........((((..(((((.....((((.....(((....)))....))))..(((......)))...)))))..)))). ( -22.50)
>DroEre_CAF1 2087 91 + 1
AAU--UU-CACAACA---UCCAC-UAGCCACUACCGCCAUCAUGGCCCUAAUGGUCAACCAGUAUGCCACCAUCAGUCCGGAUUACGCGGUGCUGGUA
...--..-.......---.....-..((((.((((((.....((((.....(((....)))....))))((........)).....)))))).)))). ( -24.60)
>DroYak_CAF1 2100 91 + 1
AAU--UU-CAUAAUA---UCCAC-UAGCCACUACCGCCAUCAUGGCUCUAAUGGUCAACCAGUAUGCCACGAUUAGUCCGGAUUAUGCGGUGCUGGUG
...--..-.......---..(((-((((....(((((.(((.((((.....(((....)))....)))).)))((((....)))).)))))))))))) ( -26.80)
>DroAna_CAF1 2421 93 + 1
AACGUUC-UACUGUC---UUCCC-UAGCCACCACUGCUAUCAUGGCCCUAAUGGUCAACCAGUAUGCCACUAUUAAUCCGGACUAUGCUGUUCUCUUG
...((..-(((((..---.....-((((.......))))...(((((.....)))))..))))).))............((((......))))..... ( -14.60)
>consensus
AAU__UU_CACAACA___UCCAC_UAGCCACAACCGCCAUCAUGGCUCUAAUGGUCAACCAGUAUGCCACUAUCAGUCCGGAUUAUGCGGUGCUGGUG
..........................((((..(((((.....((((.....(((....)))....))))((........)).....)))))..)))). (-16.11 = -16.83 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:44 2006