Locus 4015

Sequence ID 2R_DroMel_CAF1
Location 13,262,877 – 13,262,968
Length 91
Max. P 0.859110
window6478

overview

Window 8

Location 13,262,877 – 13,262,968
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 76.47
Mean single sequence MFE -24.69
Consensus MFE -14.86
Energy contribution -15.28
Covariance contribution 0.42
Combinations/Pair 1.36
Mean z-score -1.75
Structure conservation index 0.60
SVM decision value 0.82
SVM RNA-class probability 0.859110
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13262877 91 - 20766785
CUAGCCAGUGGAGCUGCCAGCUAUCAUUUGAAAUUCAAGUAAAGUUGGCAGCCCCCU----GGCGUCUGAAAAAUAGCGCG-AAG--UGAAGUAA----ACU
...(((((.((.((((((((((...(((((.....)))))..)))))))))).))))----))).................-...--........----... ( -34.70)
>DroSec_CAF1 2044 91 - 1
CUAAACAGUGUAGCUGCCAGCUGUCAUUUAAAAUUCAAGUAAAGUUGGCAGCCCCUU----GGCGUCUGAAAAAUAGCGCG-AAA--GGAAGAAA----ACU
............((((((((((...((((.......))))..)))))))))).((((----.(((.(((.....)))))).-.))--))......----... ( -26.10)
>DroSim_CAF1 1839 91 - 1
CUAAACAGUGUAGCUGCCAGCUGUCAUUUAAAAUUCAAGUAAAGUUGGCAGCCCCUU----GGCGUCUGAAAAAUAGCGCG-AAA--GGAAGAAA----ACU
............((((((((((...((((.......))))..)))))))))).((((----.(((.(((.....)))))).-.))--))......----... ( -26.10)
>DroEre_CAF1 2044 93 - 1
CUAAGCAGUGUUGCUGCCUGCUGUCAUUUUAAAUUCAAGUAAAGUUGGCAGCCCCCU----AGCGUCUGAAAAAUUGCGCGGAAA--GGAAAAAAA---UCU
....((((.....))))..((((((((((((........))))).)))))))..(((----.((((..........))))....)--)).......---... ( -21.40)
>DroYak_CAF1 2051 91 - 1
CUGAGCAGUGUAGUUGUCUUCUGUCAUUUUAAAUUCAACUGAAGUUGGCAGCCCCCU----GGCGUCUGAAAAUUAGCGCG-AAA--GGAAGAAA----ACU
...........((((.(((((((((((((((........))))).))))))...(((----.(((.((((...))))))).-..)--)))))).)----))) ( -19.20)
>DroAna_CAF1 2091 93 - 1
----GCACUGCAA----CAAUUGUCAUUCAUUAUUUUUCAAAAGUUGGCAGUGCUCUCGGAAGCGUCCAAAAAAUAGCGCG-AAGGAGGACAUAAGUUUGCA
----(((((((((----(..(((...............)))..))).)))))))((((....((((..........)))).-...))))............. ( -20.66)
>consensus
CUAAGCAGUGUAGCUGCCAGCUGUCAUUUAAAAUUCAAGUAAAGUUGGCAGCCCCCU____GGCGUCUGAAAAAUAGCGCG_AAA__GGAAGAAA____ACU
............((((((((((....................))))))))))..........((((..........))))...................... (-14.86 = -15.28 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:43 2006