Locus 4014

Sequence ID 2R_DroMel_CAF1
Location 13,262,630 – 13,262,738
Length 108
Max. P 0.671225
window6477

overview

Window 7

Location 13,262,630 – 13,262,738
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -31.27
Consensus MFE -21.78
Energy contribution -23.82
Covariance contribution 2.03
Combinations/Pair 1.22
Mean z-score -1.55
Structure conservation index 0.70
SVM decision value 0.29
SVM RNA-class probability 0.671225
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13262630 108 - 20766785
AAAAGAUGCGUCUGUUUGACAACAUUCAGGAGUCGGAGGAAGAAAGUUUUUCCGAAUACUCGGACACGGAAUCGGAGUACAAGUACCAGUCGAGCGAGGCAACCGAAG
......(((.((.(((((((............(((((((((.....))))))))).(((((.((.......)).))))).........))))))))).)))....... ( -31.00)
>DroSec_CAF1 1796 108 - 1
AAAAGAUGCGCCUGUUUGACAACAUUCAGGAGUCGGAGGAGGAGAGUUUUUCCGAAUACUCGGACACGGAAUCGGAGUACAAGUACCAGUCGAGCGAGGCGACCGAAG
........((((((((((((............(((((((((.....))))))))).(((((.((.......)).))))).........))))))).)))))....... ( -33.50)
>DroSim_CAF1 1591 108 - 1
AAAAGAUGCGCCUGUUUGACAACAUUCAGGAGUCGGAGGAGGAGAGUUUUUCCGAAUACUCGGACACGGAAUCGGAGUACAAGUACCAGUCGAGCGAGGCGACCGAAG
........((((((((((((............(((((((((.....))))))))).(((((.((.......)).))))).........))))))).)))))....... ( -33.50)
>DroEre_CAF1 1797 108 - 1
AAAAGAUGCGCCUGUUUGACAACAUUCAUGAGUCGGAGGAGGAGAGUUUCUCUGAAUACUCGGACACAGAAUCGGACUACAAGUACCAAUCGAGCGAGGCAAAUGAUG
.........((((((((((....((((.((.(((.(((..((((.....)))).....))).))).)))))).((((.....)).))..)))))).))))........ ( -30.90)
>DroYak_CAF1 1794 108 - 1
AAAAGAUGCGCCUGUUUGACCACAUUCACGAGACGGAGGAGGAGAGCUUCUCCGAAUACUCGGACACAGAAUCGGAGUACAGGGACGAGUCGAGCGGGGCGACUGAUG
...((.(((.(((((((((((............((((((((.....))))))))..(((((.((.......)).))))).......).))))))))))))).)).... ( -38.70)
>DroAna_CAF1 1875 90 - 1
AAAAGCUACGACUCUUUGAUGACAUCCAGGAAUCGGAGGAUGACAGCUACUCGGAGUACUCAGAUACGGAAUCCGACUAUA------------------CUCCCAAUG
...((((.....((((((((..(.....)..)))))))).....))))....((((((.((.(((.....))).))...))------------------))))..... ( -20.00)
>consensus
AAAAGAUGCGCCUGUUUGACAACAUUCAGGAGUCGGAGGAGGAGAGUUUCUCCGAAUACUCGGACACGGAAUCGGAGUACAAGUACCAGUCGAGCGAGGCGACCGAAG
.........(((((((((((............(((((((((.....))))))))).(((((.((.......)).))))).........))))))).))))........ (-21.78 = -23.82 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:42 2006