Locus 4013

Sequence ID 2R_DroMel_CAF1
Location 13,257,021 – 13,257,138
Length 117
Max. P 0.768991
window6476

overview

Window 6

Location 13,257,021 – 13,257,138
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.17
Mean single sequence MFE -30.54
Consensus MFE -17.16
Energy contribution -18.35
Covariance contribution 1.20
Combinations/Pair 1.15
Mean z-score -2.01
Structure conservation index 0.56
SVM decision value 0.52
SVM RNA-class probability 0.768991
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13257021 117 - 20766785
---AAUAUUUACCGCAUCUUUUCCGAAGAUUUCGUGCACUGCGUAGACAUAAAAGUCAAUGAGCUCCAGGAUGCAAGCCACAAUCUUGGGAGAGAUGCAGUGCAAUAACUUGCACAUCUG
---..........(((((((((((.((((((..(((...(((((.(((......)))..((.....))..)))))...)))))))))))))))))))).((((((....))))))..... ( -37.90)
>DroVir_CAF1 2199 120 - 1
AAUCCUUCUUACCGCAUCCCUGCCGAAUAUCUCAUGCACUGCAUACGCAUAAAAAUCAAGCAACUCCAGCAUGCACGAUACUAUCUUUGGCGAGAUGCAGUGCAGCAGCUUGCACAUUUG
.............(((...((((.((.....)).((((((((((.(((...........(((.........))).(((........))))))..))))))))))))))..)))....... ( -31.50)
>DroWil_CAF1 1938 120 - 1
UGAUUCACUUACCGCAUCUUUCCCAAAGAUCUCAUGCACUGCAUAGGCAUAAAAAUCAAUCAACUCCAGCAUGCAAGAGACAAUUUUCGGUGAGAUGCAAUGUAACAGUUUGCACAUCUG
.............(((((((.((.((((.((((.((((.(((..((.................))...))))))).))))...)))).)).)))))))..(((((....)))))...... ( -25.83)
>DroMoj_CAF1 2355 120 - 1
AUCUCUACUUACAGCAUCCUUGCCAAAGAUCUCAUGCACUGCAUAGGCAUAAAAGUCGAGCAGCUCCAGCAUGCUCGCCACUAUCUUGGGCGAGAUGCAGUGCAGCAGCUUGCACAUCUG
.............(((((.(((((.(((((...((((.((....))))))....(.((((((((....)).)))))).)...))))).)))))))))).((((((....))))))..... ( -41.10)
>DroAna_CAF1 2228 115 - 1
-----CACUUACUGCAUCUUUGCCAAAGAUUUCAUGCACAGCAUAAACAUAAAAAUCAAUCAACUCCAGCAUGCAGGAAACAAUCUUGGGAGAAAUACAGUGCAACAGUUUGCACAUUUG
-----.......((.((.(((.((((.((((.(((((...............................)))))..(....))))))))).))).)).))((((((....))))))..... ( -19.88)
>DroPer_CAF1 2348 117 - 1
---CUUACUUACCGCGUCCUUGCCAAAGAUCUCGUGAACAGCGAACGCGUAAAAAUCAAUAAGCUCCAGCAUGCAGGACACAAUCUUAGGAGAGAUGCAGUGCAGAAGUUUGCACAUUUG
---..........(((((.(..((.(((((...(((..(.((....))..............((........)).)..))).))))).))..)))))).((((((....))))))..... ( -27.00)
>consensus
___CCUACUUACCGCAUCCUUGCCAAAGAUCUCAUGCACUGCAUAGGCAUAAAAAUCAAUCAACUCCAGCAUGCAAGACACAAUCUUGGGAGAGAUGCAGUGCAACAGCUUGCACAUCUG
.............(((((....((.(((((.((.((((.(((..........................))))))).))....))))).))...))))).((((((....))))))..... (-17.16 = -18.35 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:41 2006