Locus 4012

Sequence ID 2R_DroMel_CAF1
Location 13,254,694 – 13,254,795
Length 101
Max. P 0.934978
window6475

overview

Window 5

Location 13,254,694 – 13,254,795
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 75.91
Mean single sequence MFE -22.88
Consensus MFE -13.54
Energy contribution -15.35
Covariance contribution 1.81
Combinations/Pair 1.17
Mean z-score -2.12
Structure conservation index 0.59
SVM decision value 1.24
SVM RNA-class probability 0.934978
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13254694 101 + 20766785
CUGUAGACAAUGAUGUACCUAUUUUCUAGGUACUAUAACUUUAUAUAUUUUUUAACACUGCAAGUAGCUUUAGCAAUGCUUGCGGAUGCUGGUCACACUCG
.(((.(((......(((((((.....)))))))........................(((((((((((....))..)))))))))......)))))).... ( -26.00)
>DroSec_CAF1 1902 101 + 1
CUGUAGACAAUGAUUUACCUAUUUUCUAGGUACUAUAACCUUAUAUAUUUUCUAACACUGCAAGCAGCUUUUGCAAUGCUUGCGGAUGCUGGUCACACUUG
.(((.(((.......((((((.....)))))).........................(((((((((((....))..)))))))))......)))))).... ( -25.10)
>DroSim_CAF1 1896 76 + 1
C-------------------------UAGGUACUAUAACCUUAUAUAUUUUCUAACACUGCAAGUAGCUUUAGCAUUGCUUGCGGAUGCUGGUCACACUUG
.-------------------------.((((......))))..........(((.(((((((((((((....))..))))))))).)).)))......... ( -17.40)
>DroYak_CAF1 1929 100 + 1
CAACAGUCAAUGAUGUACCUAUUUUCUAGGUACGCCAAUUGUAUUUCUUUUCUAACACUGAAUUUAGCUUUGGCAUUGGUUGU-GAUGCUGGUCACACUUG
..(((..((((...(((((((.....)))))))(((((..((..(((............)))....)).)))))))))..)))-(((....)))....... ( -23.00)
>consensus
CUGUAGACAAUGAUGUACCUAUUUUCUAGGUACUAUAACCUUAUAUAUUUUCUAACACUGCAAGUAGCUUUAGCAAUGCUUGCGGAUGCUGGUCACACUUG
..............(((((((.....)))))))..................(((.(((((((((((((....))..))))))))).)).)))......... (-13.54 = -15.35 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:40 2006