Locus 3987

Sequence ID	2R_DroMel_CAF1
Location	13,186,285 – 13,186,376
Length	91
Max. P	0.979959

overview

Window 6

Location	13,186,285 – 13,186,376
Length	91
Sequences	6
Columns	91
Reading direction	forward
Mean pairwise identity	80.88
Mean single sequence MFE	-18.11
Consensus MFE	-11.09
Energy contribution	-11.40
Covariance contribution	0.31
Combinations/Pair	1.15
Mean z-score	-2.66
Structure conservation index	0.61
SVM decision value	1.04
SVM RNA-class probability	0.904296
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13186285 91 + 20766785
UUAAAAACUAAGUUUCACUGUCACAGUUAAACCAAAAACACAACUAAUAAAAACUGUUUUAGGUGAUGAAACUGCGACAGCAGACAAUAGA
...........((((..(((((.(((((..(((.((((((..............)))))).))).....))))).))))).))))...... ( -20.24)
>DroSim_CAF1 81089 91 + 1
UUAAAAACUAAGUUUCACUGUCACAGUUAAACCAAAAACACAACUAAUAAAAACUGUUUUUAGUGAUGAAACUGCGACAGCAGACAAUAGA
...........((((..(((((.(((((..((.(((((((..............))))))).)).....))))).))))).))))...... ( -17.84)
>DroEre_CAF1 81363 91 + 1
UUAAAAACUAAGUUUCACUGUCACAGUCGAACCAAAAACACAACUAAUCAAAACUGUCUUUAGUGAUGAAACUGCGACAGCAGACAAUAGA
...........((((.((((...)))).))))...........(((.(((..((((....))))..)))..((((....))))....))). ( -15.40)
>DroYak_CAF1 82303 91 + 1
UUAAAAACUAAGUUUUACUGUCACAGUCAAACCAAAAACACAUCUAAUCAAAACUGUUUUCAGUGAUGAAACUGCGACAGCAGACAAUAGA
...........((((.((((...)))).))))..........((((.(((..((((....))))..)))..((((....))))....)))) ( -17.10)
>DroAna_CAF1 78204 89 + 1
UUAAAAACUAGGAUU-ACGGCCACAGUAAAGCCUAAAACACGAUUAAUCAAAAUUGUUUUUAGUGGAGAAACUGUGGC-GUAUACAGUAGA
......(((.(...(-(((.(((((((....(((((((.((((((......)))))))))))..))....))))))))-)))..))))... ( -22.60)
>DroPer_CAF1 76166 88 + 1
UUAUUAACUAGGAC-AACUGCCGCAAUACAACUACAAACACGCAUGAUAAAAAAUGUGUUUAGCUAUG-AACUGGGGCAGCAGACGAUGG-
..............-..(((((.((................((((........))))(((((....))-))))).)))))..........- ( -15.50)
>consensus
UUAAAAACUAAGUUUCACUGUCACAGUAAAACCAAAAACACAACUAAUAAAAACUGUUUUUAGUGAUGAAACUGCGACAGCAGACAAUAGA
.......(((.......(((((.((((...((..((((((..............))))))..))......)))).))))).......))). (-11.09 = -11.40 +   0.31)

alignment

secondary structure

dotplot

Window 7

Location	13,186,285 – 13,186,376
Length	91
Sequences	6
Columns	91
Reading direction	reverse
Mean pairwise identity	80.88
Mean single sequence MFE	-24.34
Consensus MFE	-21.98
Energy contribution	-21.96
Covariance contribution	-0.02
Combinations/Pair	1.45
Mean z-score	-3.53
Structure conservation index	0.90
SVM decision value	1.85
SVM RNA-class probability	0.979959
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13186285 91 - 20766785
UCUAUUGUCUGCUGUCGCAGUUUCAUCACCUAAAACAGUUUUUAUUAGUUGUGUUUUUGGUUUAACUGUGACAGUGAAACUUAGUUUUUAA
.(((...((.((((((((((((.....(((.((((((..............)))))).)))..))))))))))))))....)))....... ( -24.64)
>DroSim_CAF1 81089 91 - 1
UCUAUUGUCUGCUGUCGCAGUUUCAUCACUAAAAACAGUUUUUAUUAGUUGUGUUUUUGGUUUAACUGUGACAGUGAAACUUAGUUUUUAA
.(((...((.((((((((((((.....((((((((((..............))))))))))..))))))))))))))....)))....... ( -26.44)
>DroEre_CAF1 81363 91 - 1
UCUAUUGUCUGCUGUCGCAGUUUCAUCACUAAAGACAGUUUUGAUUAGUUGUGUUUUUGGUUCGACUGUGACAGUGAAACUUAGUUUUUAA
.(((...((.((((((((((((.....((((((((((..............))))))))))..))))))))))))))....)))....... ( -26.24)
>DroYak_CAF1 82303 91 - 1
UCUAUUGUCUGCUGUCGCAGUUUCAUCACUGAAAACAGUUUUGAUUAGAUGUGUUUUUGGUUUGACUGUGACAGUAAAACUUAGUUUUUAA
.(((.....(((((((((((((.....((..((((((((((.....)))).))))))..))..))))))))))))).....)))....... ( -28.40)
>DroAna_CAF1 78204 89 - 1
UCUACUGUAUAC-GCCACAGUUUCUCCACUAAAAACAAUUUUGAUUAAUCGUGUUUUAGGCUUUACUGUGGCCGU-AAUCCUAGUUUUUAA
...((((..(((-((((((((.......((((((((.(((......))).)).)))))).....))))))).)))-)....))))...... ( -19.30)
>DroPer_CAF1 76166 88 - 1
-CCAUCGUCUGCUGCCCCAGUU-CAUAGCUAAACACAUUUUUUAUCAUGCGUGUUUGUAGUUGUAUUGCGGCAGUU-GUCCUAGUUAAUAA
-.....(.(.((((((.((((.-.((((((((((((..............)))))..))))))))))).)))))).-).)........... ( -21.04)
>consensus
UCUAUUGUCUGCUGUCGCAGUUUCAUCACUAAAAACAGUUUUGAUUAGUUGUGUUUUUGGUUUAACUGUGACAGUGAAACUUAGUUUUUAA
..........((((((((((((.....((((((((((..............))))))))))..))))))))))))................ (-21.98 = -21.96 +  -0.02)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:03 2006