| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,166,052 – 13,166,164 |
| Length | 112 |
| Max. P | 0.868994 |
| Location | 13,166,052 – 13,166,164 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.71 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -24.65 |
| Energy contribution | -25.15 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13166052 112 - 20766785 UUAAACUCCUUUCUUAUUUGUAUUGCU--------UUUAUAUUUUGCAGGUGGUGGUCGUCGGGCCACCAGAAUGACCUUGGCCACCGCGGUUUCCAUUUGGCUGCUGGCCAUACUCUGC ...........................--------..........(((((((((((((....)))))))).........((((((..((((((.......))))))))))))...))))) ( -34.20) >DroSec_CAF1 60247 112 - 1 UUUAACUCCUUUCUUAUUUGUAUUGCU--------UUUAUAUUUGGCAGGAGGUGGUCGUCGGGCCACUAGAAUGACUUUGGCCACCGCGGUAUCCAUUUGGCUGCUGGCCAUACUCUGC .....(((((.((.....((((.....--------..))))...)).)))))((((((....))))))......((...((((((..(((((.........)))))))))))...))... ( -32.00) >DroSim_CAF1 60981 112 - 1 UUUAACUCCUUUCUUAUUUGUAUUGCU--------UUUAUAUUUGGCAGGAGGUGGUCGUCGCGCCACUAGAAUGACCUUGGCCACCGCGGUUUCCAUUUGGCUGCUGGCCAUACUCUGC .....(((((.((.....((((.....--------..))))...)).)))))(((((......)))))......((...((((((..((((((.......))))))))))))...))... ( -30.40) >DroEre_CAF1 60901 112 - 1 AUUAACUCCUUUCUCAUUUGCAUUGCU--------UUUGAAUUUUUCAGGAGGUGGUCGUCGGGCCACCAGAAUGACCUUGGCCACAGCGGUUUCUAUUUGGCUGCUGGCCAUUCUCUGC .............((((((.......(--------(((((.....))))))(((((((....))))))).))))))...((((((((((.(........).)))).))))))........ ( -35.60) >DroWil_CAF1 77851 112 - 1 --------UAUUUUUACCUGUAUAAAUGUGAAAAUUAUUAAUUAAAUAGGAGGUGGUCGUCGAGCGACUCAUAUGACUUUGGCCAUUGCUGUAUCUAUUUGGCUUUUGGCCAUACUUUGC --------.((((((((.(......).)))))))).............(((((((((((.....)))).))).......((((((..((((........))))...))))))..)))).. ( -25.40) >DroYak_CAF1 61698 106 - 1 UUUACCUCCCCUCUCAUUUGCAU--------------UGAAUUUUUCAGGAGGUGGUCGUCGGGCCACCAGAAUGACCUUGGCCACCGCGGUUUCCAUUUGGCUGCUGGCCAUUCUCUGC ...((((((......((((....--------------.))))......))))))(((((((((....)).).)))))).((((((..((((((.......))))))))))))........ ( -33.90) >consensus UUUAACUCCUUUCUUAUUUGUAUUGCU________UUUAAAUUUUGCAGGAGGUGGUCGUCGGGCCACCAGAAUGACCUUGGCCACCGCGGUUUCCAUUUGGCUGCUGGCCAUACUCUGC ..............................................((((.(((((((....)))))))..........((((((..((((((.......))))))))))))...)))). (-24.65 = -25.15 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:57 2006