| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,145,223 – 13,145,328 |
| Length | 105 |
| Max. P | 0.745904 |
| Location | 13,145,223 – 13,145,328 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 77.60 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -13.08 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745904 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13145223 105 + 20766785 CGGA-AAUGCCAGAGU----UUCUGCA----CGACUGCAAUGGGUGGAAAAACAUGUUCCAGAAAUGUAUGUACAUGUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU .((.-..(((((.(((----(((((..----...(..(.....)..)....((((((..((....)).....)))))).)))))))).)))))....))............... ( -26.80) >DroSec_CAF1 39017 106 + 1 CGGCAUAUGCCCGAGU----UUCUGCA----CGACCGCAAUGGGUGGAAAAACAUGUUCCAGAAAUGUAUGUACAUGUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU .(((((.((((..(((----(((((..----...((((.....))))....((((((..((....)).....)))))).))))))))..)))).)))))............... ( -34.40) >DroSim_CAF1 40806 106 + 1 CGGCAUAUGCCUGAGU----UUCUGCU----CGACCGCAAUGGGUGGAAAAACAUGUUCCAGAAAUGUAUGUACAUGUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU .(((((.((((..(((----(((((.(----(.(((......))).))...((((((..((....)).....)))))).))))))))..)))).)))))............... ( -35.40) >DroEre_CAF1 39580 85 + 1 UAA--AACCCC---------UUCUGCA----CGACCGCAAUGGGUGGAAAAACAUGUUCCAGC--------------UACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU ...--.((((.---------...(((.----.....)))..))))((((.......))))(((--------------(.......(((((((....)))))))..))))..... ( -19.30) >DroYak_CAF1 39898 100 + 1 CGA--AGUCCCUCACUUCACUUCUGCA----CGAGCGCAAUGGGUGGAGAAACAUGUUCCAGC--------UACAGCUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU ...--.((((..........(((((..----..(((....(((.(((((.......))))).)--------))..))).)))))...(((((....)))))))))......... ( -27.30) >DroAna_CAF1 39153 94 + 1 CGA--AAGCCA-UCAC----AUAUGCAGCAGCAACCGCAAUGGGUGGAAAAACAUGUUCCAGCAA-------------ACUGAAAUUAUAGCAAAUGCCAUGGACGGCUAAUUU ...--.((((.-((.(----((..(((...((..((((.....))))............(((...-------------.)))........))...))).))))).))))..... ( -20.60) >consensus CGA__AAUCCC_GAGU____UUCUGCA____CGACCGCAAUGGGUGGAAAAACAUGUUCCAGAAA______UACAUGUACAGAAAUUAUGGCAAAUGCCAUGGACAGCUAAUUU ....................(((((........(((......)))((((.......))))...................))))).(((((((....)))))))........... (-13.08 = -13.63 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:56 2006